RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 UGGT1Q9NYU2 1555 aa13.69□□□□□ -0.22
USP54-211ENST00000474929 KDM5DQ9BY66 1539 aa13.68□□□□□ -0.22
USP54-211ENST00000474929 PZPP20742 1482 aa13.67□□□□□ -0.22
USP54-211ENST00000474929 SPAG9O60271 1321 aaKnown RBP13.67□□□□□ -0.22
USP54-211ENST00000474929 INO80Q9ULG1 1556 aaPredicted RBP13.67□□□□□ -0.22
USP54-211ENST00000474929 ADGBQ8N7X0 1667 aa13.66□□□□□ -0.22
USP54-211ENST00000474929 STRCP1A6NGW2 1772 aa13.66□□□□□ -0.22
USP54-211ENST00000474929 ZNF772Q68DY9 489 aaPredicted RBP13.66□□□□□ -0.22
USP54-211ENST00000474929 SRCAPQ6ZRS2 3230 aa13.66□□□□□ -0.22
USP54-211ENST00000474929 CDK12Q9NYV4 1490 aaPredicted RBP13.66□□□□□ -0.22
USP54-211ENST00000474929 GGT6Q6P531 493 aa13.65□□□□□ -0.22
USP54-211ENST00000474929 PLEKHH2Q8IVE3 1493 aa13.64□□□□□ -0.23
USP54-211ENST00000474929 JCADQ9P266 1359 aa13.63□□□□□ -0.23
USP54-211ENST00000474929 SYCP2Q9BX26 1530 aa13.63□□□□□ -0.23
USP54-211ENST00000474929 ROBO1Q9Y6N7 1651 aa13.63□□□□□ -0.23
USP54-211ENST00000474929 RANGAP1P46060 587 aaPredicted RBP13.62□□□□□ -0.23
USP54-211ENST00000474929 ZC3H13Q5T200 1668 aaKnown RBP13.61□□□□□ -0.23
USP54-211ENST00000474929 CDC42BPAQ5VT25 1732 aa13.6□□□□□ -0.23
USP54-211ENST00000474929 CSRNP3Q8WYN3 585 aa13.6□□□□□ -0.23
USP54-211ENST00000474929 MIA2Q96PC5 1412 aa13.59□□□□□ -0.23
USP54-211ENST00000474929 KIAA1107Q9UPP5 1409 aa13.59□□□□□ -0.23
USP54-211ENST00000474929 ATP1B4Q9UN42 357 aaPredicted RBP13.59□□□□□ -0.23
USP54-211ENST00000474929 EEA1Q15075 1411 aa13.58□□□□□ -0.24
USP54-211ENST00000474929 CCDC18Q5T9S5 1454 aa13.58□□□□□ -0.24
USP54-211ENST00000474929 SPATA31A6Q5VVP1 1343 aa13.58□□□□□ -0.24
USP54-211ENST00000474929 XIRP1Q702N8 1843 aaKnown RBP13.57□□□□□ -0.24
USP54-211ENST00000474929 TRIM52Q96A61 297 aa13.57□□□□□ -0.24
USP54-211ENST00000474929 FGD6Q6ZV73 1430 aa13.56□□□□□ -0.24
USP54-211ENST00000474929 PHLPP1O60346 1717 aa13.56□□□□□ -0.24
USP54-211ENST00000474929 SCAF11Q99590 1463 aaKnown RBP13.55□□□□□ -0.24
USP54-211ENST00000474929 RXRBP28702 533 aa13.55□□□□□ -0.24
USP54-211ENST00000474929 MEX3CQ5U5Q3 659 aaKnown RBP13.55□□□□□ -0.24
USP54-211ENST00000474929 ZRANB1Q9UGI0 708 aa13.53□□□□□ -0.24
USP54-211ENST00000474929 ABCC3O15438 1527 aa13.51□□□□□ -0.25
USP54-211ENST00000474929 FBXO31Q5XUX0 539 aaPredicted RBP13.51□□□□□ -0.25
USP54-211ENST00000474929 RTEL1-TNFRSF6BF6WH68 1400 aa13.5□□□□□ -0.25
USP54-211ENST00000474929 ZNF777Q9ULD5 760 aaPredicted RBP13.5□□□□□ -0.25
USP54-211ENST00000474929 TMEM94Q12767 1356 aa13.49□□□□□ -0.25
USP54-211ENST00000474929 DHX29Q7Z478 1369 aaKnown RBP13.49□□□□□ -0.25
USP54-211ENST00000474929 WASHC2CQ9Y4E1 1318 aa13.49□□□□□ -0.25
USP54-211ENST00000474929 LRRIQ1Q96JM4 1722 aa13.49□□□□□ -0.25
USP54-211ENST00000474929 SHPRHQ149N8 1683 aa13.49□□□□□ -0.25
USP54-211ENST00000474929 COL16A1Q07092 1604 aaPredicted RBP13.49□□□□□ -0.25
USP54-211ENST00000474929 MAP3K1Q13233 1512 aa13.49□□□□□ -0.25
USP54-211ENST00000474929 NKTRP30414 1462 aaKnown RBP13.48□□□□□ -0.25
USP54-211ENST00000474929 LRP6O75581 1613 aa13.48□□□□□ -0.25
USP54-211ENST00000474929 TIAM1Q13009 1591 aa13.48□□□□□ -0.25
USP54-211ENST00000474929 SLIT1O75093 1534 aa13.48□□□□□ -0.25
USP54-211ENST00000474929 MSH6P52701 1360 aa13.47□□□□□ -0.25
USP54-211ENST00000474929 ATAD2Q6PL18 1390 aa13.46□□□□□ -0.25
USP54-211ENST00000474929 HNRNPMP52272 730 aaKnown RBP eCLIP13.46□□□□□ -0.253e-6■■■■□ 21.2
USP54-211ENST00000474929 UBR1Q8IWV7 1749 aa13.46□□□□□ -0.25
USP54-211ENST00000474929 ARHGAP23Q9P227 1491 aa13.46□□□□□ -0.25
USP54-211ENST00000474929 PRDM15P57071 1507 aaPredicted RBP13.45□□□□□ -0.26
USP54-211ENST00000474929 GPATCH8Q9UKJ3 1502 aaKnown RBP13.45□□□□□ -0.26
USP54-211ENST00000474929 EID1Q9Y6B2 187 aa13.44□□□□□ -0.26
USP54-211ENST00000474929 ARHGAP35Q9NRY4 1499 aa13.43□□□□□ -0.26
USP54-211ENST00000474929 RGS12O14924 1447 aa13.43□□□□□ -0.26
USP54-211ENST00000474929 ERVK-7P63135 1459 aa13.42□□□□□ -0.26
USP54-211ENST00000474929 NWD1Q149M9 1564 aa13.42□□□□□ -0.26
USP54-211ENST00000474929 KIF3BO15066 747 aa13.42□□□□□ -0.26
USP54-211ENST00000474929 CFDP1Q9UEE9 299 aaPredicted RBP13.42□□□□□ -0.26
USP54-211ENST00000474929 AHDC1Q5TGY3 1603 aaPredicted RBP13.42□□□□□ -0.26
USP54-211ENST00000474929 LRP5O75197 1615 aa13.41□□□□□ -0.26
USP54-211ENST00000474929 SETBP1Q9Y6X0 1596 aa13.41□□□□□ -0.26
USP54-211ENST00000474929 CASKIN1Q8WXD9 1431 aa13.4□□□□□ -0.26
USP54-211ENST00000474929 KCNA6P17658 529 aa13.4□□□□□ -0.26
USP54-211ENST00000474929 SLAIN2Q9P270 581 aa13.4□□□□□ -0.26
USP54-211ENST00000474929 CAMSAP2Q08AD1 1489 aa13.4□□□□□ -0.26
USP54-211ENST00000474929 RBM6P78332 1123 aaKnown RBP13.39□□□□□ -0.27
USP54-211ENST00000474929 TXNDC2Q86VQ3 553 aa13.39□□□□□ -0.27
USP54-211ENST00000474929 CCNB3Q8WWL7 1395 aa13.39□□□□□ -0.27
USP54-211ENST00000474929 KDM5AP29375 1690 aaKnown RBP13.38□□□□□ -0.27
USP54-211ENST00000474929 NCOA2Q15596 1464 aa13.38□□□□□ -0.27
USP54-211ENST00000474929 NUTM2BA6NNL0 878 aaPredicted RBP13.38□□□□□ -0.27
USP54-211ENST00000474929 NUTM2EB1AL46 878 aaPredicted RBP13.38□□□□□ -0.27
USP54-211ENST00000474929 NUTM2DQ5VT03 806 aaPredicted RBP13.38□□□□□ -0.27
USP54-211ENST00000474929 PROSER2Q86WR7 435 aaPredicted RBP13.38□□□□□ -0.27
USP54-211ENST00000474929 NUTM2AQ8IVF1 878 aaPredicted RBP13.38□□□□□ -0.27
USP54-211ENST00000474929 CCDC125Q86Z20 511 aa13.37□□□□□ -0.27
USP54-211ENST00000474929 RBM33Q96EV2 1170 aaKnown RBP13.37□□□□□ -0.27
USP54-211ENST00000474929 NGLY1Q96IV0 654 aa13.37□□□□□ -0.27
USP54-211ENST00000474929 FYCO1Q9BQS8 1478 aa13.36□□□□□ -0.27
USP54-211ENST00000474929 NCOA3Q9Y6Q9 1424 aa13.36□□□□□ -0.27
USP54-211ENST00000474929 AFF2P51816 1311 aa13.36□□□□□ -0.27
USP54-211ENST00000474929 CCDC141Q6ZP82 1450 aa13.35□□□□□ -0.27
USP54-211ENST00000474929 MBD5Q9P267 1494 aa13.35□□□□□ -0.27
USP54-211ENST00000474929 EIF2AK4Q9P2K8 1649 aaKnown RBP13.33□□□□□ -0.28
USP54-211ENST00000474929 LTKP29376 864 aa13.33□□□□□ -0.28
USP54-211ENST00000474929 TMEM2Q9UHN6 1383 aa13.32□□□□□ -0.28
USP54-211ENST00000474929 RSPH4AQ5TD94 716 aa13.31□□□□□ -0.28
USP54-211ENST00000474929 DIP2AQ14689 1571 aa13.31□□□□□ -0.28
USP54-211ENST00000474929 TET3O43151 1660 aa13.29□□□□□ -0.28
USP54-211ENST00000474929 EFCAB6Q5THR3 1501 aa13.29□□□□□ -0.28
USP54-211ENST00000474929 NHSL1Q5SYE7 1610 aa13.28□□□□□ -0.28
USP54-211ENST00000474929 CADPS2Q86UW7 1296 aa13.28□□□□□ -0.28
USP54-211ENST00000474929 QTRT2Q9H974 415 aaKnown RBP13.28□□□□□ -0.28
USP54-211ENST00000474929 ARHGAP31Q2M1Z3 1444 aa13.28□□□□□ -0.28
USP54-211ENST00000474929 UBTFP17480 764 aaKnown RBP13.27□□□□□ -0.29
USP54-211ENST00000474929 MROH1Q8NDA8 1641 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms