RNA–Protein interactions for RNA: ENST00000474289.6

ECHDC1-214, Transcript of ethylmalonyl-CoA decarboxylase 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene ECHDC1, Length 2,443 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ECHDC1-214ENST00000474289 ST20-MTHFSA0A0A6YYL1 179 aa24.43■■□□□ 1.5
ECHDC1-214ENST00000474289 KDM2BQ8NHM5 1336 aa24.43■■□□□ 1.5
ECHDC1-214ENST00000474289 FRAT2O75474 233 aaPredicted RBP24.42■■□□□ 1.5
ECHDC1-214ENST00000474289 FAM43AQ8N2R8 423 aa24.41■■□□□ 1.5
ECHDC1-214ENST00000474289 RSPH6AQ9H0K4 717 aa24.41■■□□□ 1.5
ECHDC1-214ENST00000474289 PARD3Q8TEW0 1356 aa24.41■■□□□ 1.5
ECHDC1-214ENST00000474289 PKD2Q13563 968 aa24.4■■□□□ 1.5
ECHDC1-214ENST00000474289 DISP1Q96F81 1524 aa24.4■■□□□ 1.5
ECHDC1-214ENST00000474289 CAMSAP2Q08AD1 1489 aa24.4■■□□□ 1.5
ECHDC1-214ENST00000474289 DCAF11Q8TEB1 546 aa24.4■■□□□ 1.5
ECHDC1-214ENST00000474289 C8orf34Q49A92 452 aa24.39■■□□□ 1.49
ECHDC1-214ENST00000474289 KIAA0556O60303 1618 aa24.38■■□□□ 1.49
ECHDC1-214ENST00000474289 C20orf194Q5TEA3 1177 aa24.38■■□□□ 1.49
ECHDC1-214ENST00000474289 PRG4Q92954 1404 aaPredicted RBP24.38■■□□□ 1.49
ECHDC1-214ENST00000474289 FAM161AQ3B820 660 aa24.37■■□□□ 1.49
ECHDC1-214ENST00000474289 CFDP1Q9UEE9 299 aaPredicted RBP24.37■■□□□ 1.49
ECHDC1-214ENST00000474289 ZNF777Q9ULD5 760 aaPredicted RBP24.36■■□□□ 1.49
ECHDC1-214ENST00000474289 RAPGEF6Q8TEU7 1601 aa24.36■■□□□ 1.49
ECHDC1-214ENST00000474289 CENPQQ7L2Z9 268 aaPredicted RBP24.34■■□□□ 1.49
ECHDC1-214ENST00000474289 BLMP54132 1417 aaPredicted RBP24.34■■□□□ 1.49
ECHDC1-214ENST00000474289 ADGBQ8N7X0 1667 aa24.34■■□□□ 1.49
ECHDC1-214ENST00000474289 ARHGEF12Q9NZN5 1544 aa24.32■■□□□ 1.48
ECHDC1-214ENST00000474289 TROQ12816 1431 aaPredicted RBP24.29■■□□□ 1.48
ECHDC1-214ENST00000474289 GPATCH8Q9UKJ3 1502 aaKnown RBP24.29■■□□□ 1.48
ECHDC1-214ENST00000474289 INSRP06213 1382 aa24.29■■□□□ 1.48
ECHDC1-214ENST00000474289 KIAA0586Q9BVV6 1533 aa24.29■■□□□ 1.48
ECHDC1-214ENST00000474289 ZMYM4Q5VZL5 1548 aa24.28■■□□□ 1.48
ECHDC1-214ENST00000474289 ZNF608Q9ULD9 1512 aaPredicted RBP24.28■■□□□ 1.48
ECHDC1-214ENST00000474289 KDM2AQ9Y2K7 1162 aa24.27■■□□□ 1.48
ECHDC1-214ENST00000474289 ADGRL2O95490 1459 aa24.27■■□□□ 1.48
ECHDC1-214ENST00000474289 PER1O15534 1290 aaPredicted RBP24.27■■□□□ 1.48
ECHDC1-214ENST00000474289 PLEKHH2Q8IVE3 1493 aa24.26■■□□□ 1.47
ECHDC1-214ENST00000474289 CROCC2H7BZ55 1655 aa24.26■■□□□ 1.47
ECHDC1-214ENST00000474289 ITSN2Q9NZM3 1697 aa24.25■■□□□ 1.47
ECHDC1-214ENST00000474289 ANKRD50Q9ULJ7 1429 aa24.25■■□□□ 1.47
ECHDC1-214ENST00000474289 ANKRD30AQ9BXX3 1397 aa24.24■■□□□ 1.47
ECHDC1-214ENST00000474289 PLB1Q6P1J6 1458 aa24.22■■□□□ 1.47
ECHDC1-214ENST00000474289 NUP155O75694 1391 aa24.22■■□□□ 1.47
ECHDC1-214ENST00000474289 RGS3P49796 1198 aa24.21■■□□□ 1.47
ECHDC1-214ENST00000474289 CC2D1BQ5T0F9 858 aaKnown RBP24.21■■□□□ 1.47
ECHDC1-214ENST00000474289 POGKQ9P215 609 aa24.2■■□□□ 1.46
ECHDC1-214ENST00000474289 MRC2Q9UBG0 1479 aa24.17■■□□□ 1.46
ECHDC1-214ENST00000474289 RRAGDQ9NQL2 400 aaPredicted RBP24.16■■□□□ 1.46
ECHDC1-214ENST00000474289 GRIN2AQ12879 1464 aa24.15■■□□□ 1.46
ECHDC1-214ENST00000474289 DUSP27Q5VZP5 1158 aa24.15■■□□□ 1.46
ECHDC1-214ENST00000474289 CEP170Q5SW79 1584 aa24.15■■□□□ 1.46
ECHDC1-214ENST00000474289 ADCY10Q96PN6 1610 aa24.15■■□□□ 1.46
ECHDC1-214ENST00000474289 VIRMAQ69YN4 1812 aaKnown RBP24.13■■□□□ 1.45
ECHDC1-214ENST00000474289 USP19O94966 1318 aa24.12■■□□□ 1.45
ECHDC1-214ENST00000474289 PLEKHH1Q9ULM0 1364 aa24.12■■□□□ 1.45
ECHDC1-214ENST00000474289 ADAMTS8Q9UP79 889 aa24.12■■□□□ 1.45
ECHDC1-214ENST00000474289 COL17A1Q9UMD9 1497 aaPredicted RBP24.11■■□□□ 1.45
ECHDC1-214ENST00000474289 C9orf84Q5VXU9 1444 aa24.1■■□□□ 1.45
ECHDC1-214ENST00000474289 TRPM1Q7Z4N2 1603 aa24.1■■□□□ 1.45
ECHDC1-214ENST00000474289 CDC42BPAQ5VT25 1732 aa24.1■■□□□ 1.45
ECHDC1-214ENST00000474289 IFT140Q96RY7 1462 aa24.1■■□□□ 1.45
ECHDC1-214ENST00000474289 KDM5DQ9BY66 1539 aa24.09■■□□□ 1.45
ECHDC1-214ENST00000474289 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.09■■□□□ 1.45
ECHDC1-214ENST00000474289 PANK3Q9H999 370 aa24.08■■□□□ 1.44
ECHDC1-214ENST00000474289 DISP3Q9P2K9 1392 aa24.07■■□□□ 1.44
ECHDC1-214ENST00000474289 PRAG1Q86YV5 1406 aa24.07■■□□□ 1.44
ECHDC1-214ENST00000474289 L1TD1Q5T7N2 865 aaKnown RBP24.06■■□□□ 1.44
ECHDC1-214ENST00000474289 ZNF521Q96K83 1311 aa24.06■■□□□ 1.44
ECHDC1-214ENST00000474289 NBPF1Q3BBV0 1214 aa24.04■■□□□ 1.44
ECHDC1-214ENST00000474289 SLKQ9H2G2 1235 aaPredicted RBP24.04■■□□□ 1.44
ECHDC1-214ENST00000474289 GOLGA2Q08379 1002 aa24.03■■□□□ 1.44
ECHDC1-214ENST00000474289 PKNOX2Q96KN3 472 aa24.03■■□□□ 1.44
ECHDC1-214ENST00000474289 SHANK2Q9UPX8 1470 aa24.03■■□□□ 1.44
ECHDC1-214ENST00000474289 TESK2Q96S53 571 aa24.03■■□□□ 1.44
ECHDC1-214ENST00000474289 EIF3AQ14152 1382 aaKnown RBP24.03■■□□□ 1.44
ECHDC1-214ENST00000474289 EIF4G3O43432 1585 aaKnown RBP24.02■■□□□ 1.44
ECHDC1-214ENST00000474289 SEC24BO95487 1268 aa24.01■■□□□ 1.43
ECHDC1-214ENST00000474289 BECN1Q14457 450 aa24.01■■□□□ 1.43
ECHDC1-214ENST00000474289 TSPY4P0CV99 314 aa24.01■■□□□ 1.43
ECHDC1-214ENST00000474289 TSPY10P0CW01 314 aa24.01■■□□□ 1.43
ECHDC1-214ENST00000474289 HNRNPMP52272 730 aaKnown RBP eCLIP24■■□□□ 1.433e-8■■■■■ 29
ECHDC1-214ENST00000474289 GPRASP1Q5JY77 1395 aa24■■□□□ 1.43
ECHDC1-214ENST00000474289 PTPRGP23470 1445 aa24■■□□□ 1.43
ECHDC1-214ENST00000474289 ABCC10Q5T3U5 1492 aa24■■□□□ 1.43
ECHDC1-214ENST00000474289 PLEKHD1A6NEE1 506 aa23.99■■□□□ 1.43
ECHDC1-214ENST00000474289 ANTXR1Q9H6X2 564 aa23.98■■□□□ 1.43
ECHDC1-214ENST00000474289 NLRP1Q9C000 1473 aa23.98■■□□□ 1.43
ECHDC1-214ENST00000474289 IGHDP01880 384 aa23.98■■□□□ 1.43
ECHDC1-214ENST00000474289 WDR43Q15061 677 aaKnown RBP eCLIP23.98■■□□□ 1.43
ECHDC1-214ENST00000474289 SLFN5Q08AF3 891 aa23.97■■□□□ 1.43
ECHDC1-214ENST00000474289 PRDM15P57071 1507 aaPredicted RBP23.97■■□□□ 1.43
ECHDC1-214ENST00000474289 RGL3Q3MIN7 710 aa23.96■■□□□ 1.43
ECHDC1-214ENST00000474289 GLIPR1L2Q4G1C9 344 aa23.96■■□□□ 1.43
ECHDC1-214ENST00000474289 CHMP7Q8WUX9 453 aaPredicted RBP23.96■■□□□ 1.43
ECHDC1-214ENST00000474289 ERBINQ96RT1 1412 aa23.96■■□□□ 1.43
ECHDC1-214ENST00000474289 FBLN2P98095 1184 aa23.96■■□□□ 1.43
ECHDC1-214ENST00000474289 MAGI1Q96QZ7 1491 aaPredicted RBP23.95■■□□□ 1.42
ECHDC1-214ENST00000474289 CLASP1Q7Z460 1538 aa23.94■■□□□ 1.42
ECHDC1-214ENST00000474289 XRCC6P12956 609 aaKnown RBP eCLIP23.94■■□□□ 1.42
ECHDC1-214ENST00000474289 LAMC1P11047 1609 aa23.94■■□□□ 1.42
ECHDC1-214ENST00000474289 ARXQ96QS3 562 aa23.93■■□□□ 1.42
ECHDC1-214ENST00000474289 FAM135AQ9P2D6 1515 aa23.93■■□□□ 1.42
ECHDC1-214ENST00000474289 PPP2R1AP30153 589 aa23.93■■□□□ 1.42
ECHDC1-214ENST00000474289 BCAR3O75815 825 aa23.92■■□□□ 1.42
ECHDC1-214ENST00000474289 TRMT2AQ8IZ69 625 aaKnown RBP23.92■■□□□ 1.42
Retrieved 100 of 20,778 RNA–protein pairs in 127.4 ms