RNA–Protein interactions for RNA: ENST00000472679.1

CLK1-209, Transcript of CDC like kinase 1, humanhuman

TSL 2

Gene CLK1, Length 461 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-209ENST00000472679 NPDC1Q9NQX5 325 aaPredicted RBP13.07□□□□□ -0.32
CLK1-209ENST00000472679 VARS2Q5ST30 1063 aaKnown RBP13.06□□□□□ -0.32
CLK1-209ENST00000472679 PTGDRQ13258 359 aa13.05□□□□□ -0.32
CLK1-209ENST00000472679 FAM205CA6NFA0 338 aa13.04□□□□□ -0.32
CLK1-209ENST00000472679 BCL2L12Q9HB09 334 aa13.04□□□□□ -0.32
CLK1-209ENST00000472679 POTEB3A0JP26 581 aa13.03□□□□□ -0.32
CLK1-209ENST00000472679 FCHSD2O94868 740 aa13.03□□□□□ -0.32
CLK1-209ENST00000472679 POTEBQ6S5H4 581 aa13.03□□□□□ -0.32
CLK1-209ENST00000472679 BARGINQ6ZT62 677 aa13.03□□□□□ -0.32
CLK1-209ENST00000472679 FECHP22830 423 aa13.01□□□□□ -0.33
CLK1-209ENST00000472679 COL9A1P20849 921 aa13□□□□□ -0.33
CLK1-209ENST00000472679 GNPATO15228 680 aa12.98□□□□□ -0.33
CLK1-209ENST00000472679 HIC1Q14526 733 aa12.98□□□□□ -0.33
CLK1-209ENST00000472679 POTEEQ6S8J3 1075 aa12.98□□□□□ -0.33
CLK1-209ENST00000472679 HS3ST6Q96QI5 342 aa12.98□□□□□ -0.33
CLK1-209ENST00000472679 SLC24A3Q9HC58 644 aa12.98□□□□□ -0.33
CLK1-209ENST00000472679 PTPREP23469 700 aa12.96□□□□□ -0.33
CLK1-209ENST00000472679 KCNK17Q96T54 332 aa12.96□□□□□ -0.33
CLK1-209ENST00000472679 PSEN2P49810 448 aa12.94□□□□□ -0.34
CLK1-209ENST00000472679 KRI1Q8N9T8 703 aaKnown RBP12.94□□□□□ -0.34
CLK1-209ENST00000472679 AXIN2Q9Y2T1 843 aa12.94□□□□□ -0.34
CLK1-209ENST00000472679 ZNF687Q8N1G0 1237 aa12.93□□□□□ -0.34
CLK1-209ENST00000472679 CERKQ8TCT0 537 aa12.92□□□□□ -0.34
CLK1-209ENST00000472679 PPP1R3GB7ZBB8 358 aa12.91□□□□□ -0.34
CLK1-209ENST00000472679 PADI6Q6TGC4 694 aa12.91□□□□□ -0.34
CLK1-209ENST00000472679 MAP2K5Q13163 448 aa12.9□□□□□ -0.34
CLK1-209ENST00000472679 ARHGAP33O14559 1287 aa12.89□□□□□ -0.35
CLK1-209ENST00000472679 PRSS12P56730 875 aa12.89□□□□□ -0.35
CLK1-209ENST00000472679 CDCA7LQ96GN5 454 aa12.89□□□□□ -0.35
CLK1-209ENST00000472679 FAM198AQ9UFP1 575 aa12.89□□□□□ -0.35
CLK1-209ENST00000472679 MINK1Q8N4C8 1332 aaPredicted RBP12.88□□□□□ -0.35
CLK1-209ENST00000472679 IRF6O14896 467 aa12.88□□□□□ -0.35
CLK1-209ENST00000472679 DMRTA1Q5VZB9 504 aa12.88□□□□□ -0.35
CLK1-209ENST00000472679 TTC13Q8NBP0 860 aa12.88□□□□□ -0.35
CLK1-209ENST00000472679 FAM161AQ3B820 660 aa12.87□□□□□ -0.35
CLK1-209ENST00000472679 PROX2Q3B8N5 592 aa12.86□□□□□ -0.35
CLK1-209ENST00000472679 CCDC102AQ96A19 550 aa12.86□□□□□ -0.35
CLK1-209ENST00000472679 AK7Q96M32 723 aa12.86□□□□□ -0.35
CLK1-209ENST00000472679 TSKSQ9UJT2 592 aa12.86□□□□□ -0.35
CLK1-209ENST00000472679 ZBED2Q9BTP6 218 aa12.85□□□□□ -0.35
CLK1-209ENST00000472679 RBM27Q9P2N5 1060 aaKnown RBP12.85□□□□□ -0.35
CLK1-209ENST00000472679 PBX2P40425 430 aa12.84□□□□□ -0.35
CLK1-209ENST00000472679 KCNH8Q96L42 1107 aa12.84□□□□□ -0.35
CLK1-209ENST00000472679 C3orf80F5H4A9 247 aa12.83□□□□□ -0.36
CLK1-209ENST00000472679 TRIM6-TRIM34B2RNG4 842 aa12.82□□□□□ -0.36
CLK1-209ENST00000472679 TRIM66O15016 1216 aa12.82□□□□□ -0.36
CLK1-209ENST00000472679 ADGRG1Q9Y653 693 aa12.81□□□□□ -0.36
CLK1-209ENST00000472679 POTEGQ6S5H5 508 aa12.78□□□□□ -0.36
CLK1-209ENST00000472679 PHOX2BQ99453 314 aa12.78□□□□□ -0.36
CLK1-209ENST00000472679 KIAA1468Q9P260 1216 aa12.77□□□□□ -0.37
CLK1-209ENST00000472679 SLC4A5Q9BY07 1137 aa12.76□□□□□ -0.37
CLK1-209ENST00000472679 VPS9D1Q9Y2B5 631 aa12.76□□□□□ -0.37
CLK1-209ENST00000472679 POTEMA6NI47 508 aa12.75□□□□□ -0.37
CLK1-209ENST00000472679 ONECUT3O60422 494 aaPredicted RBP12.75□□□□□ -0.37
CLK1-209ENST00000472679 LSM11P83369 360 aaKnown RBP eCLIP12.75□□□□□ -0.375e-9■■□□□ 11.5
CLK1-209ENST00000472679 METTL3Q86U44 580 aaKnown RBP12.75□□□□□ -0.37
CLK1-209ENST00000472679 PACS2Q86VP3 889 aa12.75□□□□□ -0.37
CLK1-209ENST00000472679 SMAPO00193 183 aa12.74□□□□□ -0.37
CLK1-209ENST00000472679 BRPF1P55201 1214 aaPredicted RBP12.74□□□□□ -0.37
CLK1-209ENST00000472679 NUDT18Q6ZVK8 323 aa12.74□□□□□ -0.37
CLK1-209ENST00000472679 PXYLP1Q8TE99 480 aa12.74□□□□□ -0.37
CLK1-209ENST00000472679 NLRP7Q8WX94 980 aa12.74□□□□□ -0.37
CLK1-209ENST00000472679 TATDN2Q93075 761 aa12.74□□□□□ -0.37
CLK1-209ENST00000472679 OATP04181 439 aa12.73□□□□□ -0.37
CLK1-209ENST00000472679 PDE4DQ08499 809 aa12.73□□□□□ -0.37
CLK1-209ENST00000472679 EYA1Q99502 592 aa12.73□□□□□ -0.37
CLK1-209ENST00000472679 KRTAP3-3Q9BYR6 98 aa12.73□□□□□ -0.37
CLK1-209ENST00000472679 KRTAP3-2Q9BYR7 98 aa12.73□□□□□ -0.37
CLK1-209ENST00000472679 PNMA3Q9UL41 463 aa12.73□□□□□ -0.37
CLK1-209ENST00000472679 NBPF26B4DH59 902 aa12.71□□□□□ -0.37
CLK1-209ENST00000472679 AMHR2Q16671 573 aa12.71□□□□□ -0.37
CLK1-209ENST00000472679 RBM46Q8TBY0 533 aaKnown RBP12.71□□□□□ -0.37
CLK1-209ENST00000472679 RABGEF1Q9UJ41 708 aa12.71□□□□□ -0.37
CLK1-209ENST00000472679 NEUROD2Q15784 382 aa12.7□□□□□ -0.38
CLK1-209ENST00000472679 ANKRD13DQ6ZTN6 518 aa12.7□□□□□ -0.38
CLK1-209ENST00000472679 GPBP1L1Q9HC44 474 aaPredicted RBP12.7□□□□□ -0.38
CLK1-209ENST00000472679 TK2O00142 265 aa12.69□□□□□ -0.38
CLK1-209ENST00000472679 ADGRD1Q6QNK2 874 aa12.69□□□□□ -0.38
CLK1-209ENST00000472679 SEPT9Q9UHD8 586 aaPredicted RBP12.69□□□□□ -0.38
CLK1-209ENST00000472679 REPIN1Q9BWE0 567 aaKnown RBP12.68□□□□□ -0.38
CLK1-209ENST00000472679 BHMG1C9JSJ3 638 aaPredicted RBP12.67□□□□□ -0.38
CLK1-209ENST00000472679 MDM2Q00987 491 aaPredicted RBP12.67□□□□□ -0.38
CLK1-209ENST00000472679 CDAN1Q8IWY9 1227 aa12.67□□□□□ -0.38
CLK1-209ENST00000472679 PARP9Q8IXQ6 854 aa12.67□□□□□ -0.38
CLK1-209ENST00000472679 RCCD1A6NED2 376 aa12.66□□□□□ -0.38
CLK1-209ENST00000472679 TMUB1Q9BVT8 246 aa12.65□□□□□ -0.38
CLK1-209ENST00000472679 HRO43593 1189 aa12.64□□□□□ -0.39
CLK1-209ENST00000472679 TTLL12Q14166 644 aaPredicted RBP12.64□□□□□ -0.39
CLK1-209ENST00000472679 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.62□□□□□ -0.39
CLK1-209ENST00000472679 KDM4CQ9H3R0 1056 aa12.62□□□□□ -0.39
CLK1-209ENST00000472679 DNAJB2P25686 324 aa12.61□□□□□ -0.39
CLK1-209ENST00000472679 CLCN1P35523 988 aa12.6□□□□□ -0.39
CLK1-209ENST00000472679 GIGYF2Q6Y7W6 1299 aaKnown RBP12.6□□□□□ -0.39
CLK1-209ENST00000472679 NBPF3Q9H094 633 aa12.6□□□□□ -0.39
CLK1-209ENST00000472679 GPCPD1Q9NPB8 672 aa12.6□□□□□ -0.39
CLK1-209ENST00000472679 FAM98CQ17RN3 349 aaKnown RBP12.59□□□□□ -0.39
CLK1-209ENST00000472679 TMEM134Q9H6X4 195 aa12.59□□□□□ -0.39
CLK1-209ENST00000472679 LAPTM4BQ86VI4 370 aa12.57□□□□□ -0.4
CLK1-209ENST00000472679 MRPL50Q8N5N7 158 aaKnown RBP12.57□□□□□ -0.4
CLK1-209ENST00000472679 MS4A1P11836 297 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms