RNA–Protein interactions for RNA: ENST00000460928.1

ATPAF1-203, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 869 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-203ENST00000460928 PAXIP1Q6ZW49 1069 aaPredicted RBP10.04□□□□□ -0.8
ATPAF1-203ENST00000460928 NBPF3Q9H094 633 aa10.04□□□□□ -0.8
ATPAF1-203ENST00000460928 PDIA6Q15084 440 aa10.03□□□□□ -0.8
ATPAF1-203ENST00000460928 MRPL50Q8N5N7 158 aaKnown RBP10.02□□□□□ -0.81
ATPAF1-203ENST00000460928 CFAP44Q96MT7 982 aa10.02□□□□□ -0.81
ATPAF1-203ENST00000460928 RABGEF1Q9UJ41 708 aa10.02□□□□□ -0.81
ATPAF1-203ENST00000460928 ARIH1Q9Y4X5 557 aaPredicted RBP10.02□□□□□ -0.81
ATPAF1-203ENST00000460928 SPDYE16A6NNV3 312 aaPredicted RBP10.01□□□□□ -0.81
ATPAF1-203ENST00000460928 COL9A1P20849 921 aa10.01□□□□□ -0.81
ATPAF1-203ENST00000460928 E2F4Q16254 413 aa10□□□□□ -0.81
ATPAF1-203ENST00000460928 C6orf132Q5T0Z8 1188 aa10□□□□□ -0.81
ATPAF1-203ENST00000460928 THSD4Q6ZMP0 1018 aa10□□□□□ -0.81
ATPAF1-203ENST00000460928 ONECUT3O60422 494 aaPredicted RBP9.99□□□□□ -0.81
ATPAF1-203ENST00000460928 GOLGA8CPA6NN73 597 aa9.98□□□□□ -0.81
ATPAF1-203ENST00000460928 PROX2Q3B8N5 592 aa9.98□□□□□ -0.81
ATPAF1-203ENST00000460928 WNT2BQ93097 391 aa9.98□□□□□ -0.81
ATPAF1-203ENST00000460928 DDX12PQ92771 950 aa9.97□□□□□ -0.81
ATPAF1-203ENST00000460928 LAPTM4BQ86VI4 370 aa9.96□□□□□ -0.82
ATPAF1-203ENST00000460928 WDR70Q9NW82 654 aa9.96□□□□□ -0.82
ATPAF1-203ENST00000460928 PTPN5P54829 565 aa9.95□□□□□ -0.82
ATPAF1-203ENST00000460928 EN1Q05925 392 aaPredicted RBP9.95□□□□□ -0.82
ATPAF1-203ENST00000460928 NBR1Q14596 966 aa9.93□□□□□ -0.82
ATPAF1-203ENST00000460928 RBM33Q96EV2 1170 aaKnown RBP9.93□□□□□ -0.82
ATPAF1-203ENST00000460928 TRIM6-TRIM34B2RNG4 842 aa9.92□□□□□ -0.82
ATPAF1-203ENST00000460928 IFFO2Q5TF58 517 aa9.92□□□□□ -0.82
ATPAF1-203ENST00000460928 KIAA1468Q9P260 1216 aa9.92□□□□□ -0.82
ATPAF1-203ENST00000460928 ANKK1Q8NFD2 765 aa9.91□□□□□ -0.82
ATPAF1-203ENST00000460928 MAP3K7O43318 606 aa9.9□□□□□ -0.82
ATPAF1-203ENST00000460928 TSR1Q2NL82 804 aaKnown RBP9.88□□□□□ -0.83
ATPAF1-203ENST00000460928 ZFRQ96KR1 1074 aaKnown RBP9.88□□□□□ -0.83
ATPAF1-203ENST00000460928 SOWAHBA6NEL2 793 aa9.87□□□□□ -0.83
ATPAF1-203ENST00000460928 FAM98CQ17RN3 349 aaKnown RBP9.86□□□□□ -0.83
ATPAF1-203ENST00000460928 CERKQ8TCT0 537 aa9.86□□□□□ -0.83
ATPAF1-203ENST00000460928 ABCC9O60706 1549 aa9.86□□□□□ -0.83
ATPAF1-203ENST00000460928 PRIM1P49642 420 aaKnown RBP9.84□□□□□ -0.83
ATPAF1-203ENST00000460928 NYAP1Q6ZVC0 841 aa9.84□□□□□ -0.83
ATPAF1-203ENST00000460928 PACS2Q86VP3 889 aa9.84□□□□□ -0.83
ATPAF1-203ENST00000460928 SEPT9Q9UHD8 586 aaPredicted RBP9.84□□□□□ -0.83
ATPAF1-203ENST00000460928 TSKSQ9UJT2 592 aa9.84□□□□□ -0.83
ATPAF1-203ENST00000460928 GRXCR2A6NFK2 248 aa9.83□□□□□ -0.84
ATPAF1-203ENST00000460928 BCAMP50895 628 aa9.83□□□□□ -0.84
ATPAF1-203ENST00000460928 RGS20O76081 388 aa9.82□□□□□ -0.84
ATPAF1-203ENST00000460928 OSBPP22059 807 aa9.82□□□□□ -0.84
ATPAF1-203ENST00000460928 PRSS12P56730 875 aa9.81□□□□□ -0.84
ATPAF1-203ENST00000460928 CDCA7LQ96GN5 454 aa9.81□□□□□ -0.84
ATPAF1-203ENST00000460928 TSHZ2Q9NRE2 1034 aa9.81□□□□□ -0.84
ATPAF1-203ENST00000460928 ITGBL1O95965 494 aaPredicted RBP9.8□□□□□ -0.84
ATPAF1-203ENST00000460928 ARHGEF1Q92888 912 aaKnown RBP9.8□□□□□ -0.84
ATPAF1-203ENST00000460928 RBM27Q9P2N5 1060 aaKnown RBP9.8□□□□□ -0.84
ATPAF1-203ENST00000460928 LRCH3Q96II8 777 aa9.78□□□□□ -0.84
ATPAF1-203ENST00000460928 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.78□□□□□ -0.84
ATPAF1-203ENST00000460928 A0A0G2JS52 829 aa9.77□□□□□ -0.85
ATPAF1-203ENST00000460928 WBP1LQ9NX94 342 aa9.77□□□□□ -0.85
ATPAF1-203ENST00000460928 FAM198AQ9UFP1 575 aa9.77□□□□□ -0.85
ATPAF1-203ENST00000460928 TSR3Q9UJK0 312 aaKnown RBP9.77□□□□□ -0.85
ATPAF1-203ENST00000460928 CDHR5Q9HBB8 845 aa9.76□□□□□ -0.85
ATPAF1-203ENST00000460928 NBPF26B4DH59 902 aa9.75□□□□□ -0.85
ATPAF1-203ENST00000460928 KCNV2Q8TDN2 545 aa9.75□□□□□ -0.85
ATPAF1-203ENST00000460928 TATDN2Q93075 761 aa9.74□□□□□ -0.85
ATPAF1-203ENST00000460928 HPS5Q9UPZ3 1129 aa9.74□□□□□ -0.85
ATPAF1-203ENST00000460928 TTC13Q8NBP0 860 aa9.73□□□□□ -0.85
ATPAF1-203ENST00000460928 NPDC1Q9NQX5 325 aaPredicted RBP9.72□□□□□ -0.85
ATPAF1-203ENST00000460928 C3orf80F5H4A9 247 aa9.71□□□□□ -0.86
ATPAF1-203ENST00000460928 SMAPO00193 183 aa9.71□□□□□ -0.86
ATPAF1-203ENST00000460928 PNMA3Q9UL41 463 aa9.71□□□□□ -0.86
ATPAF1-203ENST00000460928 PLCB2Q00722 1185 aa9.7□□□□□ -0.86
ATPAF1-203ENST00000460928 SAMD7Q7Z3H4 446 aa9.7□□□□□ -0.86
ATPAF1-203ENST00000460928 P3H3Q8IVL6 736 aa9.69□□□□□ -0.86
ATPAF1-203ENST00000460928 MLLT3P42568 568 aaPredicted RBP9.68□□□□□ -0.86
ATPAF1-203ENST00000460928 PPP4CP60510 307 aa9.68□□□□□ -0.86
ATPAF1-203ENST00000460928 KCNC4Q03721 635 aa9.68□□□□□ -0.86
ATPAF1-203ENST00000460928 NUDT18Q6ZVK8 323 aa9.68□□□□□ -0.86
ATPAF1-203ENST00000460928 IRX2Q9BZI1 471 aaPredicted RBP9.68□□□□□ -0.86
ATPAF1-203ENST00000460928 PADI6Q6TGC4 694 aa9.67□□□□□ -0.86
ATPAF1-203ENST00000460928 CCDC180Q9P1Z9 1646 aa9.66□□□□□ -0.86
ATPAF1-203ENST00000460928 HDGFP51858 240 aaKnown RBP9.63□□□□□ -0.87
ATPAF1-203ENST00000460928 PTGDRQ13258 359 aa9.62□□□□□ -0.87
ATPAF1-203ENST00000460928 NECTIN2Q92692 538 aa9.62□□□□□ -0.87
ATPAF1-203ENST00000460928 EYA1Q99502 592 aa9.62□□□□□ -0.87
ATPAF1-203ENST00000460928 TJAP1Q5JTD0 557 aa9.61□□□□□ -0.87
ATPAF1-203ENST00000460928 HAP1P54257 671 aaPredicted RBP9.58□□□□□ -0.88
ATPAF1-203ENST00000460928 SWT1Q5T5J6 900 aaKnown RBP9.58□□□□□ -0.88
ATPAF1-203ENST00000460928 SLF2Q8IX21 1173 aa9.58□□□□□ -0.88
ATPAF1-203ENST00000460928 MTRQ99707 1265 aa9.57□□□□□ -0.88
ATPAF1-203ENST00000460928 IL21Q9HBE4 155 aa9.57□□□□□ -0.88
ATPAF1-203ENST00000460928 SEMA3EO15041 775 aa9.56□□□□□ -0.88
ATPAF1-203ENST00000460928 RNF40O75150 1001 aa9.56□□□□□ -0.88
ATPAF1-203ENST00000460928 APLP1P51693 650 aa9.56□□□□□ -0.88
ATPAF1-203ENST00000460928 SLC4A3P48751 1232 aa9.55□□□□□ -0.88
ATPAF1-203ENST00000460928 NUTM2FA1L443 756 aa9.54□□□□□ -0.88
ATPAF1-203ENST00000460928 ADGRG1Q9Y653 693 aa9.54□□□□□ -0.88
ATPAF1-203ENST00000460928 FCHSD2O94868 740 aa9.53□□□□□ -0.88
ATPAF1-203ENST00000460928 DNAJB2P25686 324 aa9.53□□□□□ -0.88
ATPAF1-203ENST00000460928 RBM46Q8TBY0 533 aaKnown RBP9.53□□□□□ -0.88
ATPAF1-203ENST00000460928 TESPA1A2RU30 521 aaPredicted RBP9.51□□□□□ -0.89
ATPAF1-203ENST00000460928 PRR14Q9BWN1 585 aa9.51□□□□□ -0.89
ATPAF1-203ENST00000460928 TMEM134Q9H6X4 195 aa9.51□□□□□ -0.89
ATPAF1-203ENST00000460928 ZNF516Q92618 1163 aa9.49□□□□□ -0.89
ATPAF1-203ENST00000460928 SMYD5Q6GMV2 418 aa9.48□□□□□ -0.89
ATPAF1-203ENST00000460928 RCCD1A6NED2 376 aa9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms