RNA–Protein interactions for RNA: ENST00000459854.5

UFD1-205, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best)

Gene UFD1, Length 5,038 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-205ENST00000459854 SYCP2Q9BX26 1530 aa12.79□□□□□ -0.36
UFD1-205ENST00000459854 ARAP3Q8WWN8 1544 aa12.79□□□□□ -0.36
UFD1-205ENST00000459854 ABCC5O15440 1437 aa12.79□□□□□ -0.36
UFD1-205ENST00000459854 ZNF326Q5BKZ1 582 aaKnown RBP12.79□□□□□ -0.36
UFD1-205ENST00000459854 DDX10Q13206 875 aaKnown RBP12.78□□□□□ -0.36
UFD1-205ENST00000459854 GLI2P10070 1586 aa12.78□□□□□ -0.36
UFD1-205ENST00000459854 RAB3GAP2Q9H2M9 1393 aa12.78□□□□□ -0.36
UFD1-205ENST00000459854 PPP4R2Q9NY27 417 aa12.78□□□□□ -0.36
UFD1-205ENST00000459854 TTC37Q6PGP7 1564 aa12.78□□□□□ -0.36
UFD1-205ENST00000459854 HDGFP51858 240 aaKnown RBP12.77□□□□□ -0.37
UFD1-205ENST00000459854 TRAPPC8Q9Y2L5 1435 aa12.77□□□□□ -0.37
UFD1-205ENST00000459854 ABCA9Q8IUA7 1624 aa12.77□□□□□ -0.37
UFD1-205ENST00000459854 TCOF1Q13428 1488 aaKnown RBP12.77□□□□□ -0.37
UFD1-205ENST00000459854 PPP1R15AO75807 674 aaPredicted RBP12.76□□□□□ -0.37
UFD1-205ENST00000459854 PKD2Q13563 968 aa12.76□□□□□ -0.37
UFD1-205ENST00000459854 RTEL1-TNFRSF6BF6WH68 1400 aa12.76□□□□□ -0.37
UFD1-205ENST00000459854 PPP6R1Q9UPN7 881 aa12.76□□□□□ -0.37
UFD1-205ENST00000459854 FAM9BQ8IZU0 186 aa12.75□□□□□ -0.37
UFD1-205ENST00000459854 TMC1Q8TDI8 760 aa12.75□□□□□ -0.37
UFD1-205ENST00000459854 TSPOAP1O95153 1857 aa12.75□□□□□ -0.37
UFD1-205ENST00000459854 DEKP35659 375 aaKnown RBP12.74□□□□□ -0.37
UFD1-205ENST00000459854 MPHOSPH9Q99550 1183 aa12.74□□□□□ -0.37
UFD1-205ENST00000459854 DIP2BQ9P265 1576 aa12.74□□□□□ -0.37
UFD1-205ENST00000459854 DHX29Q7Z478 1369 aaKnown RBP12.74□□□□□ -0.37
UFD1-205ENST00000459854 PREX2Q70Z35 1606 aa12.74□□□□□ -0.37
UFD1-205ENST00000459854 SHANK2Q9UPX8 1470 aa12.73□□□□□ -0.37
UFD1-205ENST00000459854 AEBP2Q6ZN18 517 aaPredicted RBP12.72□□□□□ -0.37
UFD1-205ENST00000459854 MAGI2Q86UL8 1455 aa12.72□□□□□ -0.37
UFD1-205ENST00000459854 MRS2Q9HD23 443 aa12.72□□□□□ -0.37
UFD1-205ENST00000459854 HFM1A2PYH4 1435 aa12.72□□□□□ -0.37
UFD1-205ENST00000459854 NCOA1Q15788 1441 aa12.72□□□□□ -0.37
UFD1-205ENST00000459854 A2MP01023 1474 aa12.71□□□□□ -0.37
UFD1-205ENST00000459854 PTMAP06454 111 aaKnown RBP12.7□□□□□ -0.38
UFD1-205ENST00000459854 SUPT16HQ9Y5B9 1047 aaKnown RBP12.7□□□□□ -0.38
UFD1-205ENST00000459854 ATP10AO60312 1499 aa12.7□□□□□ -0.38
UFD1-205ENST00000459854 KDM6BO15054 1643 aa12.7□□□□□ -0.38
UFD1-205ENST00000459854 ABCC1P33527 1531 aa12.69□□□□□ -0.38
UFD1-205ENST00000459854 ZFYVE16Q7Z3T8 1539 aa12.69□□□□□ -0.38
UFD1-205ENST00000459854 DUOX2Q9NRD8 1548 aa12.69□□□□□ -0.38
UFD1-205ENST00000459854 PTMSP20962 102 aa12.68□□□□□ -0.38
UFD1-205ENST00000459854 ARHGEF5Q12774 1597 aa12.68□□□□□ -0.38
UFD1-205ENST00000459854 ATP7AQ04656 1500 aa12.68□□□□□ -0.38
UFD1-205ENST00000459854 ERBINQ96RT1 1412 aa12.67□□□□□ -0.38
UFD1-205ENST00000459854 RGL3Q3MIN7 710 aa12.67□□□□□ -0.38
UFD1-205ENST00000459854 DNTTIP2Q5QJE6 756 aaKnown RBP12.67□□□□□ -0.38
UFD1-205ENST00000459854 SAMD9LQ8IVG5 1584 aa12.67□□□□□ -0.38
UFD1-205ENST00000459854 MLH3Q9UHC1 1453 aa12.66□□□□□ -0.38
UFD1-205ENST00000459854 DNMT1P26358 1616 aaKnown RBP12.66□□□□□ -0.38
UFD1-205ENST00000459854 MYH16Q9H6N6 1097 aa12.66□□□□□ -0.38
UFD1-205ENST00000459854 WDR43Q15061 677 aaKnown RBP eCLIP12.66□□□□□ -0.38
UFD1-205ENST00000459854 ARXQ96QS3 562 aa12.66□□□□□ -0.38
UFD1-205ENST00000459854 NAIPQ13075 1403 aa12.65□□□□□ -0.38
UFD1-205ENST00000459854 EID1Q9Y6B2 187 aa12.65□□□□□ -0.38
UFD1-205ENST00000459854 MBD5Q9P267 1494 aa12.65□□□□□ -0.38
UFD1-205ENST00000459854 CDC42BPAQ5VT25 1732 aa12.65□□□□□ -0.38
UFD1-205ENST00000459854 CHAF1AQ13111 956 aaPredicted RBP12.65□□□□□ -0.39
UFD1-205ENST00000459854 KDM2AQ9Y2K7 1162 aa12.65□□□□□ -0.39
UFD1-205ENST00000459854 LRRIQ1Q96JM4 1722 aa12.63□□□□□ -0.39
UFD1-205ENST00000459854 CCDC144AA2RUR9 1427 aa12.63□□□□□ -0.39
UFD1-205ENST00000459854 GOLGA6L6A8MZA4 724 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 FOXD1Q16676 465 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 RSPH6AQ9H0K4 717 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 ADGRL2O95490 1459 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 HECW2Q9P2P5 1572 aa12.62□□□□□ -0.39
UFD1-205ENST00000459854 MAP3K4Q9Y6R4 1608 aa12.61□□□□□ -0.39
UFD1-205ENST00000459854 CNTLNQ9NXG0 1405 aa12.61□□□□□ -0.39
UFD1-205ENST00000459854 MSNP26038 577 aaKnown RBP12.61□□□□□ -0.39
UFD1-205ENST00000459854 NRDCO43847 1150 aa12.61□□□□□ -0.39
UFD1-205ENST00000459854 SLC52A1Q9NWF4 448 aa12.61□□□□□ -0.39
UFD1-205ENST00000459854 YEATS2Q9ULM3 1422 aa12.6□□□□□ -0.39
UFD1-205ENST00000459854 RBM19Q9Y4C8 960 aaKnown RBP12.6□□□□□ -0.39
UFD1-205ENST00000459854 TIMELESSQ9UNS1 1208 aa12.6□□□□□ -0.39
UFD1-205ENST00000459854 EIF4G2P78344 907 aaKnown RBP eCLIP12.59□□□□□ -0.39
UFD1-205ENST00000459854 PTPRKQ15262 1439 aa12.59□□□□□ -0.39
UFD1-205ENST00000459854 CDC42BPBQ9Y5S2 1711 aa12.59□□□□□ -0.39
UFD1-205ENST00000459854 ARHGEF12Q9NZN5 1544 aa12.59□□□□□ -0.39
UFD1-205ENST00000459854 RTN4Q9NQC3 1192 aaKnown RBP12.59□□□□□ -0.39
UFD1-205ENST00000459854 USP35Q9P2H5 1018 aa12.58□□□□□ -0.4
UFD1-205ENST00000459854 CASC1Q6TDU7 716 aa12.57□□□□□ -0.4
UFD1-205ENST00000459854 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.57□□□□□ -0.4
UFD1-205ENST00000459854 THEMISQ8N1K5 641 aaPredicted RBP12.57□□□□□ -0.4
UFD1-205ENST00000459854 PNNQ9H307 717 aaKnown RBP12.57□□□□□ -0.4
UFD1-205ENST00000459854 CCER2I3L3R5 266 aa12.57□□□□□ -0.4
UFD1-205ENST00000459854 CFAP44Q96MT7 982 aa12.57□□□□□ -0.4
UFD1-205ENST00000459854 DCAF11Q8TEB1 546 aa12.56□□□□□ -0.4
UFD1-205ENST00000459854 SIN3AQ96ST3 1273 aa12.56□□□□□ -0.4
UFD1-205ENST00000459854 ZRSR1Q15695 479 aaKnown RBP12.56□□□□□ -0.4
UFD1-205ENST00000459854 CHMP4BQ9H444 224 aaKnown RBP12.56□□□□□ -0.4
UFD1-205ENST00000459854 VGFO15240 615 aaPredicted RBP12.55□□□□□ -0.4
UFD1-205ENST00000459854 IRX6P78412 446 aaPredicted RBP12.55□□□□□ -0.4
UFD1-205ENST00000459854 STAC3Q96MF2 364 aa12.54□□□□□ -0.4
UFD1-205ENST00000459854 LAS1LQ9Y4W2 734 aaKnown RBP12.54□□□□□ -0.4
UFD1-205ENST00000459854 MAST1Q9Y2H9 1570 aa12.53□□□□□ -0.4
UFD1-205ENST00000459854 DHX57Q6P158 1386 aaKnown RBP12.53□□□□□ -0.4
UFD1-205ENST00000459854 ADGBQ8N7X0 1667 aa12.53□□□□□ -0.4
UFD1-205ENST00000459854 MS4A1P11836 297 aa12.52□□□□□ -0.4
UFD1-205ENST00000459854 C14orf37Q86TY3 774 aa12.52□□□□□ -0.4
UFD1-205ENST00000459854 SENP3Q9H4L4 574 aaPredicted RBP12.52□□□□□ -0.4
UFD1-205ENST00000459854 CEBPAP49715 358 aaPredicted RBP12.52□□□□□ -0.41
UFD1-205ENST00000459854 ZMYM3Q14202 1370 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms