RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 FAM161AQ3B820 660 aa16.49■□□□□ 0.23
USP40-208ENST00000450966 RCAN3Q9UKA8 241 aa16.49■□□□□ 0.23
USP40-208ENST00000450966 SETD5Q9C0A6 1442 aa16.49■□□□□ 0.23
USP40-208ENST00000450966 DCAF11Q8TEB1 546 aa16.48■□□□□ 0.23
USP40-208ENST00000450966 IFT140Q96RY7 1462 aa16.48■□□□□ 0.23
USP40-208ENST00000450966 NEUROD2Q15784 382 aa16.48■□□□□ 0.23
USP40-208ENST00000450966 MCCP23508 829 aa16.47■□□□□ 0.23
USP40-208ENST00000450966 RBM10P98175 930 aaKnown RBP16.47■□□□□ 0.23
USP40-208ENST00000450966 GRIN2BQ13224 1484 aa16.47■□□□□ 0.23
USP40-208ENST00000450966 DDX49Q9Y6V7 483 aaKnown RBP16.47■□□□□ 0.23
USP40-208ENST00000450966 NUP155O75694 1391 aa16.46■□□□□ 0.23
USP40-208ENST00000450966 ISY1Q9ULR0 285 aaKnown RBP16.46■□□□□ 0.22
USP40-208ENST00000450966 FGD5Q6ZNL6 1462 aa16.45■□□□□ 0.22
USP40-208ENST00000450966 PKD2Q13563 968 aa16.45■□□□□ 0.22
USP40-208ENST00000450966 HMGXB3Q12766 1538 aa16.45■□□□□ 0.22
USP40-208ENST00000450966 OS9Q13438 667 aaPredicted RBP16.44■□□□□ 0.22
USP40-208ENST00000450966 TPM4P67936 248 aa16.44■□□□□ 0.22
USP40-208ENST00000450966 CCDC39Q9UFE4 941 aa16.44■□□□□ 0.22
USP40-208ENST00000450966 ARGLU1Q9NWB6 273 aaPredicted RBP16.44■□□□□ 0.22
USP40-208ENST00000450966 RDXP35241 583 aaKnown RBP16.44■□□□□ 0.22
USP40-208ENST00000450966 SLC4A3P48751 1232 aa16.43■□□□□ 0.22
USP40-208ENST00000450966 GOLGA2Q08379 1002 aa16.43■□□□□ 0.22
USP40-208ENST00000450966 U2SURPO15042 1029 aaKnown RBP16.42■□□□□ 0.22
USP40-208ENST00000450966 KIAA1211Q6ZU35 1233 aa16.41■□□□□ 0.22
USP40-208ENST00000450966 CHMP5Q9NZZ3 219 aa16.41■□□□□ 0.22
USP40-208ENST00000450966 DEF6Q9H4E7 631 aa16.41■□□□□ 0.22
USP40-208ENST00000450966 CCDC173Q0VFZ6 552 aa16.4■□□□□ 0.22
USP40-208ENST00000450966 FGD1P98174 961 aa16.4■□□□□ 0.22
USP40-208ENST00000450966 FHOD3Q2V2M9 1422 aa16.4■□□□□ 0.22
USP40-208ENST00000450966 FAM69CQ0P6D2 419 aa16.4■□□□□ 0.22
USP40-208ENST00000450966 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.39■□□□□ 0.22
USP40-208ENST00000450966 TULP1O00294 542 aaPredicted RBP16.39■□□□□ 0.21
USP40-208ENST00000450966 IRX3P78415 501 aaPredicted RBP16.39■□□□□ 0.21
USP40-208ENST00000450966 KIF16BQ96L93 1317 aa16.39■□□□□ 0.21
USP40-208ENST00000450966 TERF2IPQ9NYB0 399 aa16.39■□□□□ 0.21
USP40-208ENST00000450966 CSB-PGBD3P0DP91 1061 aa16.38■□□□□ 0.21
USP40-208ENST00000450966 RTF1Q92541 710 aaKnown RBP16.38■□□□□ 0.21
USP40-208ENST00000450966 RWDD1Q9H446 243 aaPredicted RBP16.38■□□□□ 0.21
USP40-208ENST00000450966 MORC1Q86VD1 984 aa16.38■□□□□ 0.21
USP40-208ENST00000450966 PMFBP1Q8TBY8 1022 aa16.38■□□□□ 0.21
USP40-208ENST00000450966 TMX4Q9H1E5 349 aaPredicted RBP16.38■□□□□ 0.21
USP40-208ENST00000450966 USP8P40818 1118 aa16.37■□□□□ 0.21
USP40-208ENST00000450966 CENPQQ7L2Z9 268 aaPredicted RBP16.37■□□□□ 0.21
USP40-208ENST00000450966 KCNJ4P48050 445 aa16.37■□□□□ 0.21
USP40-208ENST00000450966 CC2D2AQ9P2K1 1620 aa16.37■□□□□ 0.21
USP40-208ENST00000450966 SENP3-EIF4A1A0A087X0R7 540 aa16.37■□□□□ 0.21
USP40-208ENST00000450966 HNRNPMP52272 730 aaKnown RBP eCLIP16.37■□□□□ 0.214e-6■■□□□ 11.9
USP40-208ENST00000450966 ESPNB1AK53 854 aa16.36■□□□□ 0.21
USP40-208ENST00000450966 NASPP49321 788 aaPredicted RBP16.36■□□□□ 0.21
USP40-208ENST00000450966 AEBP1Q8IUX7 1158 aa16.36■□□□□ 0.21
USP40-208ENST00000450966 UQCRHLA0A096LP55 91 aa16.35■□□□□ 0.21
USP40-208ENST00000450966 VGFO15240 615 aaPredicted RBP16.35■□□□□ 0.21
USP40-208ENST00000450966 UQCRHP07919 91 aa16.35■□□□□ 0.21
USP40-208ENST00000450966 PAK3O75914 559 aaPredicted RBP16.35■□□□□ 0.21
USP40-208ENST00000450966 ACBD3Q9H3P7 528 aa16.35■□□□□ 0.21
USP40-208ENST00000450966 MFAP1P55081 439 aaKnown RBP16.34■□□□□ 0.21
USP40-208ENST00000450966 TPM3P06753 285 aa16.34■□□□□ 0.21
USP40-208ENST00000450966 CC2D1BQ5T0F9 858 aaKnown RBP16.34■□□□□ 0.21
USP40-208ENST00000450966 STAC3Q96MF2 364 aa16.34■□□□□ 0.21
USP40-208ENST00000450966 PDE3BQ13370 1112 aa16.33■□□□□ 0.21
USP40-208ENST00000450966 STK26Q9P289 416 aa16.33■□□□□ 0.21
USP40-208ENST00000450966 KIF3AQ9Y496 699 aa16.33■□□□□ 0.21
USP40-208ENST00000450966 CALCOCO1Q9P1Z2 691 aa16.33■□□□□ 0.2
USP40-208ENST00000450966 CFTRP13569 1480 aa16.33■□□□□ 0.2
USP40-208ENST00000450966 HDAC5Q9UQL6 1122 aa16.32■□□□□ 0.2
USP40-208ENST00000450966 LEKR1Q6ZMV7 388 aa16.31■□□□□ 0.2
USP40-208ENST00000450966 MPHOSPH9Q99550 1183 aa16.31■□□□□ 0.2
USP40-208ENST00000450966 PDCL2Q8N4E4 241 aa16.31■□□□□ 0.2
USP40-208ENST00000450966 ROCK2O75116 1388 aaKnown RBP16.31■□□□□ 0.2
USP40-208ENST00000450966 ZNF592Q92610 1267 aa16.3■□□□□ 0.2
USP40-208ENST00000450966 MSH5O43196 834 aa16.3■□□□□ 0.2
USP40-208ENST00000450966 DNAJC2Q99543 621 aaKnown RBP16.3■□□□□ 0.2
USP40-208ENST00000450966 CCDC9Q9Y3X0 531 aaKnown RBP16.3■□□□□ 0.2
USP40-208ENST00000450966 NGDNQ8NEJ9 315 aaKnown RBP16.3■□□□□ 0.2
USP40-208ENST00000450966 NAP1L2Q9ULW6 460 aaPredicted RBP16.3■□□□□ 0.2
USP40-208ENST00000450966 H0YHG0 523 aa16.29■□□□□ 0.2
USP40-208ENST00000450966 AK7Q96M32 723 aa16.29■□□□□ 0.2
USP40-208ENST00000450966 GNL2Q13823 731 aaKnown RBP16.29■□□□□ 0.2
USP40-208ENST00000450966 HSP90B2PQ58FF3 399 aa16.28■□□□□ 0.2
USP40-208ENST00000450966 TAOK2Q9UL54 1235 aa16.28■□□□□ 0.2
USP40-208ENST00000450966 SYNJ2O15056 1496 aa16.28■□□□□ 0.2
USP40-208ENST00000450966 MAPK8IP2Q13387 824 aaPredicted RBP16.28■□□□□ 0.2
USP40-208ENST00000450966 ZHX1Q9UKY1 873 aaPredicted RBP16.28■□□□□ 0.2
USP40-208ENST00000450966 SOX12O15370 315 aa16.27■□□□□ 0.2
USP40-208ENST00000450966 CGNQ9P2M7 1197 aaKnown RBP16.27■□□□□ 0.2
USP40-208ENST00000450966 SIN3AQ96ST3 1273 aa16.27■□□□□ 0.19
USP40-208ENST00000450966 IGF1RP08069 1367 aa16.27■□□□□ 0.19
USP40-208ENST00000450966 ZBED9Q6R2W3 1325 aa16.26■□□□□ 0.19
USP40-208ENST00000450966 TRAK2O60296 914 aa16.26■□□□□ 0.19
USP40-208ENST00000450966 FRAT2O75474 233 aaPredicted RBP16.26■□□□□ 0.19
USP40-208ENST00000450966 CUX1P39880 1505 aa16.26■□□□□ 0.19
USP40-208ENST00000450966 KTN1Q86UP2 1357 aaKnown RBP16.25■□□□□ 0.19
USP40-208ENST00000450966 ST18O60284 1047 aa16.25■□□□□ 0.19
USP40-208ENST00000450966 CCDC70Q6NSX1 233 aa16.25■□□□□ 0.19
USP40-208ENST00000450966 CCDC191Q8NCU4 936 aa16.25■□□□□ 0.19
USP40-208ENST00000450966 MYOM3Q5VTT5 1437 aa16.25■□□□□ 0.19
USP40-208ENST00000450966 POGZQ7Z3K3 1410 aa16.25■□□□□ 0.19
USP40-208ENST00000450966 RAD54L2Q9Y4B4 1467 aa16.25■□□□□ 0.19
USP40-208ENST00000450966 CCDC144AA2RUR9 1427 aa16.24■□□□□ 0.19
USP40-208ENST00000450966 LETM1O95202 739 aaPredicted RBP16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms