RNA–Protein interactions for RNA: ENST00000438362.6

CSDE1-205, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 4,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-205ENST00000438362 FAM161AQ3B820 660 aa8.55□□□□□ -1.04
CSDE1-205ENST00000438362 PRDM2Q13029 1718 aa8.55□□□□□ -1.04
CSDE1-205ENST00000438362 HECW1Q76N89 1606 aa8.55□□□□□ -1.04
CSDE1-205ENST00000438362 ROCK1Q13464 1354 aa8.55□□□□□ -1.04
CSDE1-205ENST00000438362 ANKRD30BQ9BXX2 1392 aa8.55□□□□□ -1.04
CSDE1-205ENST00000438362 SPAG9O60271 1321 aaKnown RBP8.55□□□□□ -1.04
CSDE1-205ENST00000438362 POGKQ9P215 609 aa8.54□□□□□ -1.04
CSDE1-205ENST00000438362 PTPRGP23470 1445 aa8.54□□□□□ -1.04
CSDE1-205ENST00000438362 EPRSP07814 1512 aaKnown RBP8.54□□□□□ -1.04
CSDE1-205ENST00000438362 CENPJQ9HC77 1338 aaPredicted RBP8.54□□□□□ -1.04
CSDE1-205ENST00000438362 CHMP4BQ9H444 224 aaKnown RBP8.54□□□□□ -1.04
CSDE1-205ENST00000438362 RWDD1Q9H446 243 aaPredicted RBP8.54□□□□□ -1.04
CSDE1-205ENST00000438362 KIF3BO15066 747 aa8.54□□□□□ -1.04
CSDE1-205ENST00000438362 SLKQ9H2G2 1235 aaPredicted RBP8.54□□□□□ -1.04
CSDE1-205ENST00000438362 U2AF1L5P0DN76 240 aaPredicted RBP8.54□□□□□ -1.04
CSDE1-205ENST00000438362 U2AF1Q01081 240 aaKnown RBP eCLIP8.54□□□□□ -1.04
CSDE1-205ENST00000438362 PMFBP1Q8TBY8 1022 aa8.54□□□□□ -1.04
CSDE1-205ENST00000438362 PTPN23Q9H3S7 1636 aa8.54□□□□□ -1.04
CSDE1-205ENST00000438362 CUL7Q14999 1698 aa8.53□□□□□ -1.04
CSDE1-205ENST00000438362 L1TD1Q5T7N2 865 aaKnown RBP8.53□□□□□ -1.04
CSDE1-205ENST00000438362 PNNQ9H307 717 aaKnown RBP8.53□□□□□ -1.04
CSDE1-205ENST00000438362 CC2D2AQ9P2K1 1620 aa8.53□□□□□ -1.04
CSDE1-205ENST00000438362 NCOA1Q15788 1441 aa8.53□□□□□ -1.04
CSDE1-205ENST00000438362 PAK3O75914 559 aaPredicted RBP8.53□□□□□ -1.04
CSDE1-205ENST00000438362 HSCBQ8IWL3 235 aa8.53□□□□□ -1.04
CSDE1-205ENST00000438362 TROQ12816 1431 aaPredicted RBP8.53□□□□□ -1.04
CSDE1-205ENST00000438362 SLC4A3P48751 1232 aa8.52□□□□□ -1.04
CSDE1-205ENST00000438362 CDCA7LQ96GN5 454 aa8.52□□□□□ -1.04
CSDE1-205ENST00000438362 E9PSI1 815 aa8.52□□□□□ -1.05
CSDE1-205ENST00000438362 CDK13Q14004 1512 aaKnown RBP8.52□□□□□ -1.05
CSDE1-205ENST00000438362 PTPRKQ15262 1439 aa8.52□□□□□ -1.05
CSDE1-205ENST00000438362 APAF1O14727 1248 aa8.52□□□□□ -1.05
CSDE1-205ENST00000438362 SRPK2P78362 688 aaKnown RBP8.52□□□□□ -1.05
CSDE1-205ENST00000438362 HSP90AB1P08238 724 aaKnown RBP8.51□□□□□ -1.05
CSDE1-205ENST00000438362 GGT6Q6P531 493 aa8.51□□□□□ -1.05
CSDE1-205ENST00000438362 SPRYD3Q8NCJ5 442 aa8.51□□□□□ -1.05
CSDE1-205ENST00000438362 PRG4Q92954 1404 aaPredicted RBP8.51□□□□□ -1.05
CSDE1-205ENST00000438362 SAFB2Q14151 953 aaKnown RBP eCLIP8.51□□□□□ -1.05
CSDE1-205ENST00000438362 WASHC2CQ9Y4E1 1318 aa8.51□□□□□ -1.05
CSDE1-205ENST00000438362 CLUAP1Q96AJ1 413 aa8.51□□□□□ -1.05
CSDE1-205ENST00000438362 CGNL1Q0VF96 1302 aa8.51□□□□□ -1.05
CSDE1-205ENST00000438362 IPO8O15397 1037 aaKnown RBP8.5□□□□□ -1.05
CSDE1-205ENST00000438362 GSE1Q14687 1217 aa8.5□□□□□ -1.05
CSDE1-205ENST00000438362 NGEFQ8N5V2 710 aa8.5□□□□□ -1.05
CSDE1-205ENST00000438362 NCLP19338 710 aaKnown RBP8.5□□□□□ -1.05
CSDE1-205ENST00000438362 NBPF1Q3BBV0 1214 aa8.5□□□□□ -1.05
CSDE1-205ENST00000438362 ADAMTS8Q9UP79 889 aa8.5□□□□□ -1.05
CSDE1-205ENST00000438362 RPRD2Q5VT52 1461 aaKnown RBP8.49□□□□□ -1.05
CSDE1-205ENST00000438362 ABCC5O15440 1437 aa8.49□□□□□ -1.05
CSDE1-205ENST00000438362 C9orf84Q5VXU9 1444 aa8.49□□□□□ -1.05
CSDE1-205ENST00000438362 CASC1Q6TDU7 716 aa8.49□□□□□ -1.05
CSDE1-205ENST00000438362 ITPRIPQ8IWB1 547 aa8.49□□□□□ -1.05
CSDE1-205ENST00000438362 COG6Q9Y2V7 657 aa8.48□□□□□ -1.05
CSDE1-205ENST00000438362 RRP7AQ9Y3A4 280 aaKnown RBP8.48□□□□□ -1.05
CSDE1-205ENST00000438362 STAC3Q96MF2 364 aa8.48□□□□□ -1.05
CSDE1-205ENST00000438362 NAP1L5Q96NT1 182 aaPredicted RBP8.48□□□□□ -1.05
CSDE1-205ENST00000438362 SMC4Q9NTJ3 1288 aa8.48□□□□□ -1.05
CSDE1-205ENST00000438362 BACH2Q9BYV9 841 aa8.48□□□□□ -1.05
CSDE1-205ENST00000438362 STK26Q9P289 416 aa8.47□□□□□ -1.05
CSDE1-205ENST00000438362 TRAK1Q9UPV9 953 aa8.47□□□□□ -1.05
CSDE1-205ENST00000438362 IQGAP2Q13576 1575 aa8.47□□□□□ -1.05
CSDE1-205ENST00000438362 MFAP1P55081 439 aaKnown RBP8.47□□□□□ -1.05
CSDE1-205ENST00000438362 BCL2L13Q9BXK5 485 aa8.46□□□□□ -1.05
CSDE1-205ENST00000438362 KIAA0586Q9BVV6 1533 aa8.46□□□□□ -1.05
CSDE1-205ENST00000438362 HDGFL2Q7Z4V5 671 aaPredicted RBP8.46□□□□□ -1.06
CSDE1-205ENST00000438362 GZF1Q9H116 711 aaPredicted RBP8.46□□□□□ -1.06
CSDE1-205ENST00000438362 PPP2R1AP30153 589 aa8.46□□□□□ -1.06
CSDE1-205ENST00000438362 IFT140Q96RY7 1462 aa8.45□□□□□ -1.06
CSDE1-205ENST00000438362 MRC2Q9UBG0 1479 aa8.45□□□□□ -1.06
CSDE1-205ENST00000438362 NFKBIBQ15653 356 aa8.45□□□□□ -1.06
CSDE1-205ENST00000438362 CNKSR2Q8WXI2 1034 aa8.45□□□□□ -1.06
CSDE1-205ENST00000438362 DMRT2Q9Y5R5 561 aa8.45□□□□□ -1.06
CSDE1-205ENST00000438362 CFAP43Q8NDM7 1665 aa8.44□□□□□ -1.06
CSDE1-205ENST00000438362 URB2Q14146 1524 aaKnown RBP8.44□□□□□ -1.06
CSDE1-205ENST00000438362 GBP4Q96PP9 640 aa8.44□□□□□ -1.06
CSDE1-205ENST00000438362 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.44□□□□□ -1.06
CSDE1-205ENST00000438362 THOC2Q8NI27 1593 aaKnown RBP8.44□□□□□ -1.06
CSDE1-205ENST00000438362 LAMC3Q9Y6N6 1575 aa8.44□□□□□ -1.06
CSDE1-205ENST00000438362 UGGT2Q9NYU1 1516 aa8.44□□□□□ -1.06
CSDE1-205ENST00000438362 GOLGA6L3A6NEY3 463 aa8.43□□□□□ -1.06
CSDE1-205ENST00000438362 CALD1Q05682 793 aaKnown RBP8.43□□□□□ -1.06
CSDE1-205ENST00000438362 ZKSCAN2Q63HK3 967 aa8.43□□□□□ -1.06
CSDE1-205ENST00000438362 CFAP44Q96MT7 982 aa8.43□□□□□ -1.06
CSDE1-205ENST00000438362 TERF2IPQ9NYB0 399 aa8.43□□□□□ -1.06
CSDE1-205ENST00000438362 SYNJ2O15056 1496 aa8.43□□□□□ -1.06
CSDE1-205ENST00000438362 HAP1P54257 671 aaPredicted RBP8.43□□□□□ -1.06
CSDE1-205ENST00000438362 CAMSAP2Q08AD1 1489 aa8.43□□□□□ -1.06
CSDE1-205ENST00000438362 SNAPC4Q5SXM2 1469 aa8.42□□□□□ -1.06
CSDE1-205ENST00000438362 RUNDC1Q96C34 613 aa8.42□□□□□ -1.06
CSDE1-205ENST00000438362 ERBINQ96RT1 1412 aa8.42□□□□□ -1.06
CSDE1-205ENST00000438362 PTMAP06454 111 aaKnown RBP8.41□□□□□ -1.06
CSDE1-205ENST00000438362 NUTM2DQ5VT03 806 aaPredicted RBP8.41□□□□□ -1.06
CSDE1-205ENST00000438362 PANK1Q8TE04 598 aa8.41□□□□□ -1.06
CSDE1-205ENST00000438362 PTMSP20962 102 aa8.41□□□□□ -1.06
CSDE1-205ENST00000438362 ARHGAP5Q13017 1502 aa8.41□□□□□ -1.06
CSDE1-205ENST00000438362 EVC2Q86UK5 1308 aa8.4□□□□□ -1.06
CSDE1-205ENST00000438362 AAMPQ13685 434 aa8.4□□□□□ -1.06
CSDE1-205ENST00000438362 CFAP70Q5T0N1 1121 aa8.4□□□□□ -1.07
CSDE1-205ENST00000438362 DZIP1LQ8IYY4 767 aaKnown RBP8.4□□□□□ -1.07
CSDE1-205ENST00000438362 TCOF1Q13428 1488 aaKnown RBP8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms