RNA–Protein interactions for RNA: ENST00000427299.6

LINC00458-202, long intergenic non-protein coding RNA 458, humanhuman

TSL 1 (best) BASIC

Gene LINC00458, Length 1,030 nt, Biotype lincRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00458-202ENST00000427299 PROX2Q3B8N5 592 aa13.51□□□□□ -0.25
LINC00458-202ENST00000427299 WNT2BQ93097 391 aa13.51□□□□□ -0.25
LINC00458-202ENST00000427299 RTN4Q9NQC3 1192 aaKnown RBP13.51□□□□□ -0.25
LINC00458-202ENST00000427299 GOLGA8CPA6NN73 597 aa13.5□□□□□ -0.25
LINC00458-202ENST00000427299 EPAS1Q99814 870 aa13.5□□□□□ -0.25
LINC00458-202ENST00000427299 RABGEF1Q9UJ41 708 aa13.5□□□□□ -0.25
LINC00458-202ENST00000427299 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.49□□□□□ -0.25
LINC00458-202ENST00000427299 C6orf132Q5T0Z8 1188 aa13.47□□□□□ -0.25
LINC00458-202ENST00000427299 PDIA6Q15084 440 aa13.45□□□□□ -0.26
LINC00458-202ENST00000427299 DDX12PQ92771 950 aa13.44□□□□□ -0.26
LINC00458-202ENST00000427299 KIAA1468Q9P260 1216 aa13.41□□□□□ -0.26
LINC00458-202ENST00000427299 ONECUT3O60422 494 aaPredicted RBP13.4□□□□□ -0.26
LINC00458-202ENST00000427299 LAPTM4BQ86VI4 370 aa13.4□□□□□ -0.26
LINC00458-202ENST00000427299 RBM33Q96EV2 1170 aaKnown RBP13.4□□□□□ -0.26
LINC00458-202ENST00000427299 IFFO2Q5TF58 517 aa13.39□□□□□ -0.27
LINC00458-202ENST00000427299 PAXIP1Q6ZW49 1069 aaPredicted RBP13.39□□□□□ -0.27
LINC00458-202ENST00000427299 ANKK1Q8NFD2 765 aa13.39□□□□□ -0.27
LINC00458-202ENST00000427299 SPDYE16A6NNV3 312 aaPredicted RBP13.37□□□□□ -0.27
LINC00458-202ENST00000427299 EN1Q05925 392 aaPredicted RBP13.37□□□□□ -0.27
LINC00458-202ENST00000427299 NBR1Q14596 966 aa13.37□□□□□ -0.27
LINC00458-202ENST00000427299 E2F4Q16254 413 aa13.37□□□□□ -0.27
LINC00458-202ENST00000427299 CFAP44Q96MT7 982 aa13.37□□□□□ -0.27
LINC00458-202ENST00000427299 ARIH1Q9Y4X5 557 aaPredicted RBP13.37□□□□□ -0.27
LINC00458-202ENST00000427299 TRIM6-TRIM34B2RNG4 842 aa13.36□□□□□ -0.27
LINC00458-202ENST00000427299 ZFRQ96KR1 1074 aaKnown RBP13.34□□□□□ -0.27
LINC00458-202ENST00000427299 SOWAHBA6NEL2 793 aa13.33□□□□□ -0.28
LINC00458-202ENST00000427299 BCAMP50895 628 aa13.33□□□□□ -0.28
LINC00458-202ENST00000427299 TSR1Q2NL82 804 aaKnown RBP13.33□□□□□ -0.28
LINC00458-202ENST00000427299 SEPT9Q9UHD8 586 aaPredicted RBP13.33□□□□□ -0.28
LINC00458-202ENST00000427299 MAP3K7O43318 606 aa13.32□□□□□ -0.28
LINC00458-202ENST00000427299 FAM98CQ17RN3 349 aaKnown RBP13.29□□□□□ -0.28
LINC00458-202ENST00000427299 WDR70Q9NW82 654 aa13.29□□□□□ -0.28
LINC00458-202ENST00000427299 PRIM1P49642 420 aaKnown RBP13.28□□□□□ -0.28
LINC00458-202ENST00000427299 TSKSQ9UJT2 592 aa13.28□□□□□ -0.28
LINC00458-202ENST00000427299 A0A0G2JS52 829 aa13.26□□□□□ -0.29
LINC00458-202ENST00000427299 ITGBL1O95965 494 aaPredicted RBP13.25□□□□□ -0.29
LINC00458-202ENST00000427299 NYAP1Q6ZVC0 841 aa13.25□□□□□ -0.29
LINC00458-202ENST00000427299 WBP1LQ9NX94 342 aa13.24□□□□□ -0.29
LINC00458-202ENST00000427299 GRXCR2A6NFK2 248 aa13.23□□□□□ -0.29
LINC00458-202ENST00000427299 RGS20O76081 388 aa13.23□□□□□ -0.29
LINC00458-202ENST00000427299 PACS2Q86VP3 889 aa13.23□□□□□ -0.29
LINC00458-202ENST00000427299 CDCA7LQ96GN5 454 aa13.22□□□□□ -0.29
LINC00458-202ENST00000427299 PRSS12P56730 875 aa13.21□□□□□ -0.29
LINC00458-202ENST00000427299 OSBPP22059 807 aa13.2□□□□□ -0.3
LINC00458-202ENST00000427299 CERKQ8TCT0 537 aa13.2□□□□□ -0.3
LINC00458-202ENST00000427299 LRCH3Q96II8 777 aa13.2□□□□□ -0.3
LINC00458-202ENST00000427299 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.2□□□□□ -0.3
LINC00458-202ENST00000427299 FAM198AQ9UFP1 575 aa13.2□□□□□ -0.3
LINC00458-202ENST00000427299 TSR3Q9UJK0 312 aaKnown RBP13.18□□□□□ -0.3
LINC00458-202ENST00000427299 HPS5Q9UPZ3 1129 aa13.17□□□□□ -0.3
LINC00458-202ENST00000427299 C3orf80F5H4A9 247 aa13.16□□□□□ -0.3
LINC00458-202ENST00000427299 CDHR5Q9HBB8 845 aa13.16□□□□□ -0.3
LINC00458-202ENST00000427299 SMAPO00193 183 aa13.14□□□□□ -0.31
LINC00458-202ENST00000427299 IRX2Q9BZI1 471 aaPredicted RBP13.12□□□□□ -0.31
LINC00458-202ENST00000427299 RBM27Q9P2N5 1060 aaKnown RBP13.12□□□□□ -0.31
LINC00458-202ENST00000427299 TATDN2Q93075 761 aa13.11□□□□□ -0.31
LINC00458-202ENST00000427299 NBPF26B4DH59 902 aa13.1□□□□□ -0.31
LINC00458-202ENST00000427299 KCNC4Q03721 635 aa13.1□□□□□ -0.31
LINC00458-202ENST00000427299 SAMD7Q7Z3H4 446 aa13.1□□□□□ -0.31
LINC00458-202ENST00000427299 TSHZ2Q9NRE2 1034 aa13.1□□□□□ -0.31
LINC00458-202ENST00000427299 PNMA3Q9UL41 463 aa13.09□□□□□ -0.31
LINC00458-202ENST00000427299 NPDC1Q9NQX5 325 aaPredicted RBP13.08□□□□□ -0.32
LINC00458-202ENST00000427299 PPP4CP60510 307 aa13.07□□□□□ -0.32
LINC00458-202ENST00000427299 TTC13Q8NBP0 860 aa13.07□□□□□ -0.32
LINC00458-202ENST00000427299 NUDT18Q6ZVK8 323 aa13.05□□□□□ -0.32
LINC00458-202ENST00000427299 ARHGEF1Q92888 912 aaKnown RBP13.05□□□□□ -0.32
LINC00458-202ENST00000427299 KCNV2Q8TDN2 545 aa13.03□□□□□ -0.32
LINC00458-202ENST00000427299 PADI6Q6TGC4 694 aa13.01□□□□□ -0.33
LINC00458-202ENST00000427299 MLLT3P42568 568 aaPredicted RBP13□□□□□ -0.33
LINC00458-202ENST00000427299 TJAP1Q5JTD0 557 aa13□□□□□ -0.33
LINC00458-202ENST00000427299 HDGFP51858 240 aaKnown RBP12.94□□□□□ -0.34
LINC00458-202ENST00000427299 MTRQ99707 1265 aa12.94□□□□□ -0.34
LINC00458-202ENST00000427299 RNF40O75150 1001 aa12.93□□□□□ -0.34
LINC00458-202ENST00000427299 APLP1P51693 650 aa12.93□□□□□ -0.34
LINC00458-202ENST00000427299 EYA1Q99502 592 aa12.93□□□□□ -0.34
LINC00458-202ENST00000427299 SWT1Q5T5J6 900 aaKnown RBP12.92□□□□□ -0.34
LINC00458-202ENST00000427299 IL21Q9HBE4 155 aa12.92□□□□□ -0.34
LINC00458-202ENST00000427299 PTGDRQ13258 359 aa12.9□□□□□ -0.34
LINC00458-202ENST00000427299 SLF2Q8IX21 1173 aa12.89□□□□□ -0.35
LINC00458-202ENST00000427299 NECTIN2Q92692 538 aa12.88□□□□□ -0.35
LINC00458-202ENST00000427299 P3H3Q8IVL6 736 aa12.86□□□□□ -0.35
LINC00458-202ENST00000427299 ZNF516Q92618 1163 aa12.86□□□□□ -0.35
LINC00458-202ENST00000427299 Q6ZNB5 142 aa12.84□□□□□ -0.35
LINC00458-202ENST00000427299 PPP1R18Q6NYC8 613 aa12.82□□□□□ -0.36
LINC00458-202ENST00000427299 ADGRG1Q9Y653 693 aa12.82□□□□□ -0.36
LINC00458-202ENST00000427299 NUTM2FA1L443 756 aa12.8□□□□□ -0.36
LINC00458-202ENST00000427299 SEMA3EO15041 775 aa12.8□□□□□ -0.36
LINC00458-202ENST00000427299 DNAJB2P25686 324 aa12.8□□□□□ -0.36
LINC00458-202ENST00000427299 SLC4A3P48751 1232 aa12.8□□□□□ -0.36
LINC00458-202ENST00000427299 NKX2-3Q8TAU0 364 aa12.79□□□□□ -0.36
LINC00458-202ENST00000427299 RBM46Q8TBY0 533 aaKnown RBP12.79□□□□□ -0.36
LINC00458-202ENST00000427299 TMEM134Q9H6X4 195 aa12.79□□□□□ -0.36
LINC00458-202ENST00000427299 COPS2P61201 443 aa12.78□□□□□ -0.36
LINC00458-202ENST00000427299 PRKD2Q9BZL6 878 aa12.77□□□□□ -0.37
LINC00458-202ENST00000427299 PRR14Q9BWN1 585 aa12.76□□□□□ -0.37
LINC00458-202ENST00000427299 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.76□□□□□ -0.37
LINC00458-202ENST00000427299 FAM161AQ3B820 660 aa12.75□□□□□ -0.37
LINC00458-202ENST00000427299 FCHSD2O94868 740 aa12.74□□□□□ -0.37
LINC00458-202ENST00000427299 LAPTM4AQ15012 233 aa12.74□□□□□ -0.37
LINC00458-202ENST00000427299 RCCD1A6NED2 376 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms