RNA–Protein interactions for RNA: ENST00000418457.6

VPS41-206, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 532 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-206ENST00000418457 HIC1Q14526 733 aa5.93□□□□□ -1.46
VPS41-206ENST00000418457 BARGINQ6ZT62 677 aa5.93□□□□□ -1.46
VPS41-206ENST00000418457 MARVELD3Q96A59 401 aa5.93□□□□□ -1.46
VPS41-206ENST00000418457 BCL2L12Q9HB09 334 aa5.93□□□□□ -1.46
VPS41-206ENST00000418457 GNPATO15228 680 aa5.92□□□□□ -1.46
VPS41-206ENST00000418457 VARS2Q5ST30 1063 aaKnown RBP5.92□□□□□ -1.46
VPS41-206ENST00000418457 KRI1Q8N9T8 703 aaKnown RBP5.92□□□□□ -1.46
VPS41-206ENST00000418457 CERKQ8TCT0 537 aa5.92□□□□□ -1.46
VPS41-206ENST00000418457 FAM205CA6NFA0 338 aa5.91□□□□□ -1.46
VPS41-206ENST00000418457 PTPREP23469 700 aa5.91□□□□□ -1.46
VPS41-206ENST00000418457 SLC24A3Q9HC58 644 aa5.91□□□□□ -1.46
VPS41-206ENST00000418457 NPDC1Q9NQX5 325 aaPredicted RBP5.91□□□□□ -1.46
VPS41-206ENST00000418457 KCNH8Q96L42 1107 aa5.9□□□□□ -1.46
VPS41-206ENST00000418457 MAP2K5Q13163 448 aa5.89□□□□□ -1.47
VPS41-206ENST00000418457 LCE2DQ5TA82 110 aaPredicted RBP5.89□□□□□ -1.47
VPS41-206ENST00000418457 PPP1R3GB7ZBB8 358 aa5.88□□□□□ -1.47
VPS41-206ENST00000418457 FECHP22830 423 aa5.88□□□□□ -1.47
VPS41-206ENST00000418457 AK7Q96M32 723 aa5.88□□□□□ -1.47
VPS41-206ENST00000418457 KCNK17Q96T54 332 aa5.88□□□□□ -1.47
VPS41-206ENST00000418457 MINK1Q8N4C8 1332 aaPredicted RBP5.88□□□□□ -1.47
VPS41-206ENST00000418457 COL9A1P20849 921 aa5.87□□□□□ -1.47
VPS41-206ENST00000418457 HS3ST6Q96QI5 342 aa5.87□□□□□ -1.47
VPS41-206ENST00000418457 RBM27Q9P2N5 1060 aaKnown RBP5.87□□□□□ -1.47
VPS41-206ENST00000418457 ARHGAP33O14559 1287 aa5.86□□□□□ -1.47
VPS41-206ENST00000418457 IRF6O14896 467 aa5.86□□□□□ -1.47
VPS41-206ENST00000418457 PRSS12P56730 875 aa5.86□□□□□ -1.47
VPS41-206ENST00000418457 PADI6Q6TGC4 694 aa5.86□□□□□ -1.47
VPS41-206ENST00000418457 ZNF687Q8N1G0 1237 aa5.86□□□□□ -1.47
VPS41-206ENST00000418457 CDCA7LQ96GN5 454 aa5.86□□□□□ -1.47
VPS41-206ENST00000418457 PBX2P40425 430 aa5.85□□□□□ -1.47
VPS41-206ENST00000418457 PSEN2P49810 448 aa5.85□□□□□ -1.47
VPS41-206ENST00000418457 CCDC102AQ96A19 550 aa5.85□□□□□ -1.47
VPS41-206ENST00000418457 POTEB3A0JP26 581 aa5.84□□□□□ -1.47
VPS41-206ENST00000418457 TRIM66O15016 1216 aa5.84□□□□□ -1.47
VPS41-206ENST00000418457 POTEBQ6S5H4 581 aa5.84□□□□□ -1.47
VPS41-206ENST00000418457 POTEEQ6S8J3 1075 aa5.84□□□□□ -1.47
VPS41-206ENST00000418457 TTC13Q8NBP0 860 aa5.84□□□□□ -1.47
VPS41-206ENST00000418457 AXIN2Q9Y2T1 843 aa5.84□□□□□ -1.47
VPS41-206ENST00000418457 TRIM6-TRIM34B2RNG4 842 aa5.83□□□□□ -1.48
VPS41-206ENST00000418457 ZBED2Q9BTP6 218 aa5.83□□□□□ -1.48
VPS41-206ENST00000418457 ONECUT3O60422 494 aaPredicted RBP5.82□□□□□ -1.48
VPS41-206ENST00000418457 OATP04181 439 aa5.82□□□□□ -1.48
VPS41-206ENST00000418457 PROX2Q3B8N5 592 aa5.82□□□□□ -1.48
VPS41-206ENST00000418457 DMRTA1Q5VZB9 504 aa5.82□□□□□ -1.48
VPS41-206ENST00000418457 FAM198AQ9UFP1 575 aa5.82□□□□□ -1.48
VPS41-206ENST00000418457 TSKSQ9UJT2 592 aa5.82□□□□□ -1.48
VPS41-206ENST00000418457 ADGRG1Q9Y653 693 aa5.82□□□□□ -1.48
VPS41-206ENST00000418457 NBPF26B4DH59 902 aa5.81□□□□□ -1.48
VPS41-206ENST00000418457 PDE4DQ08499 809 aa5.81□□□□□ -1.48
VPS41-206ENST00000418457 NEUROD2Q15784 382 aa5.81□□□□□ -1.48
VPS41-206ENST00000418457 FAM161AQ3B820 660 aa5.81□□□□□ -1.48
VPS41-206ENST00000418457 PACS2Q86VP3 889 aa5.81□□□□□ -1.48
VPS41-206ENST00000418457 RBM46Q8TBY0 533 aaKnown RBP5.81□□□□□ -1.48
VPS41-206ENST00000418457 SLC4A5Q9BY07 1137 aa5.81□□□□□ -1.48
VPS41-206ENST00000418457 BRPF1P55201 1214 aaPredicted RBP5.8□□□□□ -1.48
VPS41-206ENST00000418457 PNMA3Q9UL41 463 aa5.8□□□□□ -1.48
VPS41-206ENST00000418457 AMHR2Q16671 573 aa5.79□□□□□ -1.48
VPS41-206ENST00000418457 NUDT18Q6ZVK8 323 aa5.79□□□□□ -1.48
VPS41-206ENST00000418457 METTL3Q86U44 580 aaKnown RBP5.79□□□□□ -1.48
VPS41-206ENST00000418457 PXYLP1Q8TE99 480 aa5.79□□□□□ -1.48
VPS41-206ENST00000418457 TATDN2Q93075 761 aa5.79□□□□□ -1.48
VPS41-206ENST00000418457 KIAA1468Q9P260 1216 aa5.79□□□□□ -1.48
VPS41-206ENST00000418457 RABGEF1Q9UJ41 708 aa5.79□□□□□ -1.48
VPS41-206ENST00000418457 TK2O00142 265 aa5.78□□□□□ -1.48
VPS41-206ENST00000418457 LSM11P83369 360 aaKnown RBP eCLIP5.78□□□□□ -1.48
VPS41-206ENST00000418457 TTLL12Q14166 644 aaPredicted RBP5.78□□□□□ -1.48
VPS41-206ENST00000418457 VPS9D1Q9Y2B5 631 aa5.78□□□□□ -1.48
VPS41-206ENST00000418457 SMAPO00193 183 aa5.77□□□□□ -1.49
VPS41-206ENST00000418457 POTEGQ6S5H5 508 aa5.77□□□□□ -1.49
VPS41-206ENST00000418457 EYA1Q99502 592 aa5.77□□□□□ -1.49
VPS41-206ENST00000418457 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP5.76□□□□□ -1.49
VPS41-206ENST00000418457 RCCD1A6NED2 376 aa5.76□□□□□ -1.49
VPS41-206ENST00000418457 POTEMA6NI47 508 aa5.76□□□□□ -1.49
VPS41-206ENST00000418457 C3orf80F5H4A9 247 aa5.76□□□□□ -1.49
VPS41-206ENST00000418457 DNAJB2P25686 324 aa5.76□□□□□ -1.49
VPS41-206ENST00000418457 CLCN1P35523 988 aa5.76□□□□□ -1.49
VPS41-206ENST00000418457 MDM2Q00987 491 aaPredicted RBP5.76□□□□□ -1.49
VPS41-206ENST00000418457 ADGRD1Q6QNK2 874 aa5.76□□□□□ -1.49
VPS41-206ENST00000418457 PARP9Q8IXQ6 854 aa5.76□□□□□ -1.49
VPS41-206ENST00000418457 PHOX2BQ99453 314 aa5.76□□□□□ -1.49
VPS41-206ENST00000418457 NBPF3Q9H094 633 aa5.76□□□□□ -1.49
VPS41-206ENST00000418457 GPBP1L1Q9HC44 474 aaPredicted RBP5.76□□□□□ -1.49
VPS41-206ENST00000418457 SEPT9Q9UHD8 586 aaPredicted RBP5.76□□□□□ -1.49
VPS41-206ENST00000418457 ANKRD13DQ6ZTN6 518 aa5.75□□□□□ -1.49
VPS41-206ENST00000418457 NLRP7Q8WX94 980 aa5.75□□□□□ -1.49
VPS41-206ENST00000418457 KDM4CQ9H3R0 1056 aa5.75□□□□□ -1.49
VPS41-206ENST00000418457 GPCPD1Q9NPB8 672 aa5.75□□□□□ -1.49
VPS41-206ENST00000418457 GIGYF2Q6Y7W6 1299 aaKnown RBP5.74□□□□□ -1.49
VPS41-206ENST00000418457 STAC3Q96MF2 364 aa5.74□□□□□ -1.49
VPS41-206ENST00000418457 BHMG1C9JSJ3 638 aaPredicted RBP5.73□□□□□ -1.49
VPS41-206ENST00000418457 FAM98CQ17RN3 349 aaKnown RBP5.73□□□□□ -1.49
VPS41-206ENST00000418457 LAPTM4BQ86VI4 370 aa5.73□□□□□ -1.49
VPS41-206ENST00000418457 CDAN1Q8IWY9 1227 aa5.73□□□□□ -1.49
VPS41-206ENST00000418457 MRPL50Q8N5N7 158 aaKnown RBP5.73□□□□□ -1.49
VPS41-206ENST00000418457 TMUB1Q9BVT8 246 aa5.73□□□□□ -1.49
VPS41-206ENST00000418457 REPIN1Q9BWE0 567 aaKnown RBP5.73□□□□□ -1.49
VPS41-206ENST00000418457 KRTAP3-3Q9BYR6 98 aa5.73□□□□□ -1.49
VPS41-206ENST00000418457 KRTAP3-2Q9BYR7 98 aa5.73□□□□□ -1.49
VPS41-206ENST00000418457 TMEM134Q9H6X4 195 aa5.73□□□□□ -1.49
VPS41-206ENST00000418457 DAXXQ9UER7 740 aaPredicted RBP5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms