RNA–Protein interactions for RNA: ENST00000412061.3

BRCA1-204, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,312 nt, Biotype non stop decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-204ENST00000412061 KHSRPQ92945 711 aaKnown RBP eCLIP8.76□□□□□ -1.01
BRCA1-204ENST00000412061 ANO8Q9HCE9 1232 aaPredicted RBP8.75□□□□□ -1.01
BRCA1-204ENST00000412061 MYT1LQ9UL68 1186 aa8.75□□□□□ -1.01
BRCA1-204ENST00000412061 FCHSD2O94868 740 aa8.72□□□□□ -1.01
BRCA1-204ENST00000412061 ARXQ96QS3 562 aa8.72□□□□□ -1.01
BRCA1-204ENST00000412061 PCDHGA4Q9Y5G9 962 aa8.72□□□□□ -1.01
BRCA1-204ENST00000412061 HIC1Q14526 733 aa8.71□□□□□ -1.02
BRCA1-204ENST00000412061 GTF3C3Q9Y5Q9 886 aa8.71□□□□□ -1.02
BRCA1-204ENST00000412061 MINK1Q8N4C8 1332 aaPredicted RBP8.7□□□□□ -1.02
BRCA1-204ENST00000412061 TRIM66O15016 1216 aa8.7□□□□□ -1.02
BRCA1-204ENST00000412061 GNPATO15228 680 aa8.7□□□□□ -1.02
BRCA1-204ENST00000412061 PHF14O94880 888 aa8.7□□□□□ -1.02
BRCA1-204ENST00000412061 MAP2K5Q13163 448 aa8.7□□□□□ -1.02
BRCA1-204ENST00000412061 EPAS1Q99814 870 aa8.7□□□□□ -1.02
BRCA1-204ENST00000412061 PRIM1P49642 420 aaKnown RBP8.69□□□□□ -1.02
BRCA1-204ENST00000412061 ANKRD13DQ6ZTN6 518 aa8.68□□□□□ -1.02
BRCA1-204ENST00000412061 EN1Q05925 392 aaPredicted RBP8.67□□□□□ -1.02
BRCA1-204ENST00000412061 PDE4DQ08499 809 aa8.67□□□□□ -1.02
BRCA1-204ENST00000412061 PTGDRQ13258 359 aa8.67□□□□□ -1.02
BRCA1-204ENST00000412061 IRF6O14896 467 aa8.65□□□□□ -1.02
BRCA1-204ENST00000412061 MAP3K7O43318 606 aa8.65□□□□□ -1.02
BRCA1-204ENST00000412061 TYW1BQ6NUM6 668 aa8.65□□□□□ -1.02
BRCA1-204ENST00000412061 CCDC102AQ96A19 550 aa8.65□□□□□ -1.02
BRCA1-204ENST00000412061 GPBP1L1Q9HC44 474 aaPredicted RBP8.65□□□□□ -1.02
BRCA1-204ENST00000412061 PCDHGA10Q9Y5H3 936 aa8.65□□□□□ -1.02
BRCA1-204ENST00000412061 LSM11P83369 360 aaKnown RBP eCLIP8.64□□□□□ -1.03
BRCA1-204ENST00000412061 FBXW7Q969H0 707 aa8.64□□□□□ -1.03
BRCA1-204ENST00000412061 JPH4Q96JJ6 628 aa8.64□□□□□ -1.03
BRCA1-204ENST00000412061 KDM4FA0A1W2PPD8 638 aa8.63□□□□□ -1.03
BRCA1-204ENST00000412061 NUDT7P0C024 238 aa8.63□□□□□ -1.03
BRCA1-204ENST00000412061 FECHP22830 423 aa8.63□□□□□ -1.03
BRCA1-204ENST00000412061 RBM33Q96EV2 1170 aaKnown RBP8.63□□□□□ -1.03
BRCA1-204ENST00000412061 KDM4CQ9H3R0 1056 aa8.63□□□□□ -1.03
BRCA1-204ENST00000412061 POTEEQ6S8J3 1075 aa8.62□□□□□ -1.03
BRCA1-204ENST00000412061 CDHR5Q9HBB8 845 aa8.62□□□□□ -1.03
BRCA1-204ENST00000412061 FOSBP53539 338 aa8.6□□□□□ -1.03
BRCA1-204ENST00000412061 AMHR2Q16671 573 aa8.6□□□□□ -1.03
BRCA1-204ENST00000412061 ERICH6Q7L0X2 663 aa8.6□□□□□ -1.03
BRCA1-204ENST00000412061 NPDC1Q9NQX5 325 aaPredicted RBP8.6□□□□□ -1.03
BRCA1-204ENST00000412061 AXIN2Q9Y2T1 843 aa8.6□□□□□ -1.03
BRCA1-204ENST00000412061 TSR1Q2NL82 804 aaKnown RBP8.59□□□□□ -1.03
BRCA1-204ENST00000412061 LHX6Q9UPM6 363 aa8.59□□□□□ -1.03
BRCA1-204ENST00000412061 ZNF454Q8N9F8 522 aa8.58□□□□□ -1.04
BRCA1-204ENST00000412061 IL27Q8NEV9 243 aa8.57□□□□□ -1.04
BRCA1-204ENST00000412061 CERKQ8TCT0 537 aa8.57□□□□□ -1.04
BRCA1-204ENST00000412061 ZDHHC16Q969W1 377 aa8.57□□□□□ -1.04
BRCA1-204ENST00000412061 C6orf132Q5T0Z8 1188 aa8.55□□□□□ -1.04
BRCA1-204ENST00000412061 PARP9Q8IXQ6 854 aa8.55□□□□□ -1.04
BRCA1-204ENST00000412061 PBX2P40425 430 aa8.54□□□□□ -1.04
BRCA1-204ENST00000412061 TTLL12Q14166 644 aaPredicted RBP8.54□□□□□ -1.04
BRCA1-204ENST00000412061 DDRGK1Q96HY6 314 aa8.54□□□□□ -1.04
BRCA1-204ENST00000412061 ADAM33Q9BZ11 813 aa8.53□□□□□ -1.04
BRCA1-204ENST00000412061 FAM117AQ9C073 453 aa8.53□□□□□ -1.04
BRCA1-204ENST00000412061 PSDA5PKW4 1024 aaPredicted RBP8.52□□□□□ -1.05
BRCA1-204ENST00000412061 PPP4R3BQ5MIZ7 849 aa8.52□□□□□ -1.05
BRCA1-204ENST00000412061 HOMEZQ8IX15 550 aa8.52□□□□□ -1.05
BRCA1-204ENST00000412061 RBM27Q9P2N5 1060 aaKnown RBP8.52□□□□□ -1.05
BRCA1-204ENST00000412061 PADI6Q6TGC4 694 aa8.51□□□□□ -1.05
BRCA1-204ENST00000412061 GIGYF2Q6Y7W6 1299 aaKnown RBP8.5□□□□□ -1.05
BRCA1-204ENST00000412061 OATP04181 439 aa8.49□□□□□ -1.05
BRCA1-204ENST00000412061 CLCN1P35523 988 aa8.49□□□□□ -1.05
BRCA1-204ENST00000412061 C14orf37Q86TY3 774 aa8.49□□□□□ -1.05
BRCA1-204ENST00000412061 ADGRD1Q6QNK2 874 aa8.48□□□□□ -1.05
BRCA1-204ENST00000412061 TTC13Q8NBP0 860 aa8.48□□□□□ -1.05
BRCA1-204ENST00000412061 PLEKHG3A1L390 1219 aa8.47□□□□□ -1.05
BRCA1-204ENST00000412061 ARHGAP33O14559 1287 aa8.47□□□□□ -1.05
BRCA1-204ENST00000412061 PRSS12P56730 875 aa8.47□□□□□ -1.05
BRCA1-204ENST00000412061 MDM2Q00987 491 aaPredicted RBP8.47□□□□□ -1.05
BRCA1-204ENST00000412061 METTL3Q86U44 580 aaKnown RBP8.47□□□□□ -1.05
BRCA1-204ENST00000412061 BCL2L12Q9HB09 334 aa8.47□□□□□ -1.05
BRCA1-204ENST00000412061 GPCPD1Q9NPB8 672 aa8.47□□□□□ -1.05
BRCA1-204ENST00000412061 ADGRG1Q9Y653 693 aa8.47□□□□□ -1.05
BRCA1-204ENST00000412061 DMRTA1Q5VZB9 504 aa8.46□□□□□ -1.06
BRCA1-204ENST00000412061 CDCA7LQ96GN5 454 aa8.46□□□□□ -1.06
BRCA1-204ENST00000412061 PHOX2BQ99453 314 aa8.46□□□□□ -1.06
BRCA1-204ENST00000412061 TMUB1Q9BVT8 246 aa8.46□□□□□ -1.06
BRCA1-204ENST00000412061 REPIN1Q9BWE0 567 aaKnown RBP8.46□□□□□ -1.06
BRCA1-204ENST00000412061 PLA2G2EQ9NZK7 142 aa8.46□□□□□ -1.06
BRCA1-204ENST00000412061 MS4A1P11836 297 aa8.45□□□□□ -1.06
BRCA1-204ENST00000412061 PSEN2P49810 448 aa8.45□□□□□ -1.06
BRCA1-204ENST00000412061 FAM161AQ3B820 660 aa8.45□□□□□ -1.06
BRCA1-204ENST00000412061 PXYLP1Q8TE99 480 aa8.45□□□□□ -1.06
BRCA1-204ENST00000412061 PPP1R3GB7ZBB8 358 aa8.44□□□□□ -1.06
BRCA1-204ENST00000412061 PTPREP23469 700 aa8.44□□□□□ -1.06
BRCA1-204ENST00000412061 RBM46Q8TBY0 533 aaKnown RBP8.44□□□□□ -1.06
BRCA1-204ENST00000412061 HCSTQ9UBK5 93 aa8.44□□□□□ -1.06
BRCA1-204ENST00000412061 HRO43593 1189 aa8.42□□□□□ -1.06
BRCA1-204ENST00000412061 COL9A1P20849 921 aa8.42□□□□□ -1.06
BRCA1-204ENST00000412061 SSTR3P32745 418 aaPredicted RBP8.42□□□□□ -1.06
BRCA1-204ENST00000412061 GOPCQ9HD26 462 aa8.42□□□□□ -1.06
BRCA1-204ENST00000412061 NLRP7Q8WX94 980 aa8.4□□□□□ -1.06
BRCA1-204ENST00000412061 FAM217BQ9NTX9 383 aaPredicted RBP8.4□□□□□ -1.06
BRCA1-204ENST00000412061 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.39□□□□□ -1.07
BRCA1-204ENST00000412061 TK2O00142 265 aa8.39□□□□□ -1.07
BRCA1-204ENST00000412061 KCNH8Q96L42 1107 aa8.39□□□□□ -1.07
BRCA1-204ENST00000412061 FAM198AQ9UFP1 575 aa8.38□□□□□ -1.07
BRCA1-204ENST00000412061 TSKSQ9UJT2 592 aa8.38□□□□□ -1.07
BRCA1-204ENST00000412061 TRIM6-TRIM34B2RNG4 842 aa8.37□□□□□ -1.07
BRCA1-204ENST00000412061 NBPF26B4DH59 902 aa8.37□□□□□ -1.07
BRCA1-204ENST00000412061 PCMTD1Q96MG8 357 aaPredicted RBP8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms