RNA–Protein interactions for RNA: ENST00000394253.7

USP49-203, Transcript of ubiquitin specific peptidase 49, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP49, Length 9,034 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-203ENST00000394253 CCDC47Q96A33 483 aaKnown RBP16.43■□□□□ 0.22
USP49-203ENST00000394253 TIMELESSQ9UNS1 1208 aa16.42■□□□□ 0.22
USP49-203ENST00000394253 ITPRIPQ8IWB1 547 aa16.42■□□□□ 0.22
USP49-203ENST00000394253 TSPYL1Q9H0U9 437 aa16.41■□□□□ 0.22
USP49-203ENST00000394253 GOLGA6L10A6NI86 522 aa16.41■□□□□ 0.22
USP49-203ENST00000394253 AKAP17AQ02040 695 aaKnown RBP16.4■□□□□ 0.22
USP49-203ENST00000394253 POGKQ9P215 609 aa16.39■□□□□ 0.21
USP49-203ENST00000394253 ANKRD18AQ8IVF6 992 aa16.39■□□□□ 0.21
USP49-203ENST00000394253 FAM184AQ8NB25 1140 aa16.39■□□□□ 0.21
USP49-203ENST00000394253 NAT10Q9H0A0 1025 aaKnown RBP16.39■□□□□ 0.21
USP49-203ENST00000394253 CNKSR2Q8WXI2 1034 aa16.39■□□□□ 0.21
USP49-203ENST00000394253 APBB1O00213 710 aa16.38■□□□□ 0.21
USP49-203ENST00000394253 CCP110O43303 1012 aa16.38■□□□□ 0.21
USP49-203ENST00000394253 IFT57Q9NWB7 429 aa16.37■□□□□ 0.21
USP49-203ENST00000394253 NAP1L1P55209 391 aaKnown RBP16.37■□□□□ 0.21
USP49-203ENST00000394253 CCER2I3L3R5 266 aa16.37■□□□□ 0.21
USP49-203ENST00000394253 LRRFIP1Q32MZ4 808 aaKnown RBP16.37■□□□□ 0.21
USP49-203ENST00000394253 RCAN3Q9UKA8 241 aa16.37■□□□□ 0.21
USP49-203ENST00000394253 CC2D1BQ5T0F9 858 aaKnown RBP16.37■□□□□ 0.21
USP49-203ENST00000394253 CLASRPQ8N2M8 674 aaKnown RBP16.37■□□□□ 0.21
USP49-203ENST00000394253 SPAG9O60271 1321 aaKnown RBP16.36■□□□□ 0.21
USP49-203ENST00000394253 EZRP15311 586 aaKnown RBP16.36■□□□□ 0.21
USP49-203ENST00000394253 KTN1Q86UP2 1357 aaKnown RBP16.36■□□□□ 0.21
USP49-203ENST00000394253 ERLIN2O94905 339 aa16.35■□□□□ 0.21
USP49-203ENST00000394253 HSP90AB2PQ58FF8 381 aa16.35■□□□□ 0.21
USP49-203ENST00000394253 HMGN5P82970 282 aaKnown RBP16.35■□□□□ 0.21
USP49-203ENST00000394253 ANO8Q9HCE9 1232 aaPredicted RBP16.34■□□□□ 0.21
USP49-203ENST00000394253 EPS15P42566 896 aa16.34■□□□□ 0.21
USP49-203ENST00000394253 TMF1P82094 1093 aa16.34■□□□□ 0.21
USP49-203ENST00000394253 LMOD2Q6P5Q4 547 aa16.34■□□□□ 0.21
USP49-203ENST00000394253 CPLX2Q6PUV4 134 aaKnown RBP16.32■□□□□ 0.2
USP49-203ENST00000394253 CT47B1P0C2W7 299 aaPredicted RBP16.32■□□□□ 0.2
USP49-203ENST00000394253 CCDC39Q9UFE4 941 aa16.32■□□□□ 0.2
USP49-203ENST00000394253 SENP3-EIF4A1A0A087X0R7 540 aa16.32■□□□□ 0.2
USP49-203ENST00000394253 TRIM29Q14134 588 aa16.31■□□□□ 0.2
USP49-203ENST00000394253 SEPT7Q16181 437 aaKnown RBP16.31■□□□□ 0.2
USP49-203ENST00000394253 AXDND1Q5T1B0 1012 aaPredicted RBP16.31■□□□□ 0.2
USP49-203ENST00000394253 WWC1Q8IX03 1113 aa16.31■□□□□ 0.2
USP49-203ENST00000394253 GIMAP7Q8NHV1 300 aa16.31■□□□□ 0.2
USP49-203ENST00000394253 DHX8Q14562 1220 aaKnown RBP16.3■□□□□ 0.2
USP49-203ENST00000394253 RGL3Q3MIN7 710 aa16.3■□□□□ 0.2
USP49-203ENST00000394253 PHLDB1Q86UU1 1377 aa16.3■□□□□ 0.2
USP49-203ENST00000394253 CLIP1P30622 1438 aa16.3■□□□□ 0.2
USP49-203ENST00000394253 STK31Q9BXU1 1019 aa16.3■□□□□ 0.2
USP49-203ENST00000394253 SASS6Q6UVJ0 657 aa16.3■□□□□ 0.2
USP49-203ENST00000394253 CGNL1Q0VF96 1302 aa16.29■□□□□ 0.2
USP49-203ENST00000394253 SYNE3Q6ZMZ3 975 aa16.29■□□□□ 0.2
USP49-203ENST00000394253 CHMP3Q9Y3E7 222 aa16.29■□□□□ 0.2
USP49-203ENST00000394253 MCTP1Q6DN14 999 aa16.29■□□□□ 0.2
USP49-203ENST00000394253 RABEP1Q15276 862 aa16.28■□□□□ 0.2
USP49-203ENST00000394253 ENOX2Q16206 610 aaKnown RBP16.28■□□□□ 0.2
USP49-203ENST00000394253 EIF3AQ14152 1382 aaKnown RBP16.28■□□□□ 0.2
USP49-203ENST00000394253 EIF3JO75822 258 aaKnown RBP16.28■□□□□ 0.2
USP49-203ENST00000394253 RRP7BPQ9NSQ0 103 aa16.27■□□□□ 0.2
USP49-203ENST00000394253 RALBP1Q15311 655 aa16.27■□□□□ 0.19
USP49-203ENST00000394253 G3V3G9 751 aa16.27■□□□□ 0.19
USP49-203ENST00000394253 DCAF8Q5TAQ9 597 aa16.27■□□□□ 0.19
USP49-203ENST00000394253 NOL8Q76FK4 1167 aaKnown RBP16.26■□□□□ 0.19
USP49-203ENST00000394253 SPATA24Q86W54 205 aa16.26■□□□□ 0.19
USP49-203ENST00000394253 CCDC43Q96MW1 224 aaKnown RBP16.26■□□□□ 0.19
USP49-203ENST00000394253 EEA1Q15075 1411 aa16.26■□□□□ 0.19
USP49-203ENST00000394253 SEPT11Q9NVA2 429 aaKnown RBP16.26■□□□□ 0.19
USP49-203ENST00000394253 REC8O95072 547 aa16.26■□□□□ 0.19
USP49-203ENST00000394253 MORC1Q86VD1 984 aa16.26■□□□□ 0.19
USP49-203ENST00000394253 AMOTL1Q8IY63 956 aa16.25■□□□□ 0.19
USP49-203ENST00000394253 OFD1O75665 1012 aa16.25■□□□□ 0.19
USP49-203ENST00000394253 TXLNBQ8N3L3 684 aa16.24■□□□□ 0.19
USP49-203ENST00000394253 TOMM22Q9NS69 142 aa16.24■□□□□ 0.19
USP49-203ENST00000394253 NASPP49321 788 aaPredicted RBP16.24■□□□□ 0.19
USP49-203ENST00000394253 FOXD4L1Q9NU39 408 aa16.24■□□□□ 0.19
USP49-203ENST00000394253 IQCEQ6IPM2 695 aa16.24■□□□□ 0.19
USP49-203ENST00000394253 GBP2P32456 591 aaPredicted RBP16.23■□□□□ 0.19
USP49-203ENST00000394253 FOXD4L5Q5VV16 416 aaPredicted RBP16.23■□□□□ 0.19
USP49-203ENST00000394253 FOXD4L4Q8WXT5 416 aaPredicted RBP16.23■□□□□ 0.19
USP49-203ENST00000394253 OLFM4Q6UX06 510 aa16.23■□□□□ 0.19
USP49-203ENST00000394253 CAVIN1Q6NZI2 390 aaKnown RBP16.23■□□□□ 0.19
USP49-203ENST00000394253 NF2P35240 595 aa16.23■□□□□ 0.19
USP49-203ENST00000394253 DDX11Q96FC9 970 aa16.22■□□□□ 0.19
USP49-203ENST00000394253 SLTMQ9NWH9 1034 aaKnown RBP eCLIP16.22■□□□□ 0.19
USP49-203ENST00000394253 ZFYVE27Q5T4F4 411 aa16.22■□□□□ 0.19
USP49-203ENST00000394253 SMARCE1Q969G3 411 aa16.22■□□□□ 0.19
USP49-203ENST00000394253 LUC7LQ9NQ29 371 aaKnown RBP16.22■□□□□ 0.19
USP49-203ENST00000394253 BICD2Q8TD16 824 aa16.22■□□□□ 0.19
USP49-203ENST00000394253 SMC4Q9NTJ3 1288 aa16.22■□□□□ 0.19
USP49-203ENST00000394253 FAM161AQ3B820 660 aa16.21■□□□□ 0.19
USP49-203ENST00000394253 KANK1Q14678 1352 aa16.21■□□□□ 0.19
USP49-203ENST00000394253 FEZ1Q99689 392 aa16.21■□□□□ 0.19
USP49-203ENST00000394253 ZCCHC6Q5VYS8 1495 aaKnown RBP16.21■□□□□ 0.19
USP49-203ENST00000394253 LETM1O95202 739 aaPredicted RBP16.21■□□□□ 0.19
USP49-203ENST00000394253 GON4LQ3T8J9 2241 aa16.21■□□□□ 0.19
USP49-203ENST00000394253 RRP9O43818 475 aaKnown RBP16.21■□□□□ 0.19
USP49-203ENST00000394253 SLC26A8Q96RN1 970 aa16.2■□□□□ 0.18
USP49-203ENST00000394253 RUFY2Q8WXA3 655 aa16.2■□□□□ 0.18
USP49-203ENST00000394253 CENPQQ7L2Z9 268 aaPredicted RBP16.2■□□□□ 0.18
USP49-203ENST00000394253 R3HCC1Q9Y3T6 440 aaKnown RBP16.2■□□□□ 0.18
USP49-203ENST00000394253 ZKSCAN1P17029 563 aaPredicted RBP16.2■□□□□ 0.18
USP49-203ENST00000394253 PPM1EQ8WY54 764 aa16.19■□□□□ 0.18
USP49-203ENST00000394253 FRAT2O75474 233 aaPredicted RBP16.19■□□□□ 0.18
USP49-203ENST00000394253 SENP3Q9H4L4 574 aaPredicted RBP16.19■□□□□ 0.18
USP49-203ENST00000394253 CCAR1Q8IX12 1150 aaKnown RBP16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms