RNA–Protein interactions for RNA: ENST00000374732.7

USP48-203, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 3,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-203ENST00000374732 APPP05067 770 aa10.56□□□□□ -0.72
USP48-203ENST00000374732 AQRO60306 1485 aaKnown RBP eCLIP10.56□□□□□ -0.721e-6■■■□□ 16.3
USP48-203ENST00000374732 MAPK8IP2Q13387 824 aaPredicted RBP10.56□□□□□ -0.72
USP48-203ENST00000374732 KIF13AQ9H1H9 1805 aa10.55□□□□□ -0.72
USP48-203ENST00000374732 APBB1O00213 710 aa10.55□□□□□ -0.72
USP48-203ENST00000374732 UHRF1BP1LA0JNW5 1464 aa10.53□□□□□ -0.72
USP48-203ENST00000374732 BRD1O95696 1058 aa10.53□□□□□ -0.72
USP48-203ENST00000374732 LOC102724159A0A0B4J2E5 919 aa10.52□□□□□ -0.72
USP48-203ENST00000374732 VGLL3A8MV65 326 aa10.52□□□□□ -0.72
USP48-203ENST00000374732 PWP2Q15269 919 aaKnown RBP10.52□□□□□ -0.72
USP48-203ENST00000374732 RBM19Q9Y4C8 960 aaKnown RBP10.52□□□□□ -0.72
USP48-203ENST00000374732 ZNF316A6NFI3 1004 aaPredicted RBP10.52□□□□□ -0.73
USP48-203ENST00000374732 MFAP1P55081 439 aaKnown RBP10.51□□□□□ -0.73
USP48-203ENST00000374732 HSP90AB4PQ58FF6 505 aa10.51□□□□□ -0.73
USP48-203ENST00000374732 IRX3P78415 501 aaPredicted RBP10.51□□□□□ -0.73
USP48-203ENST00000374732 RAD54L2Q9Y4B4 1467 aa10.5□□□□□ -0.73
USP48-203ENST00000374732 EXOC8Q8IYI6 725 aa10.49□□□□□ -0.73
USP48-203ENST00000374732 MPNDQ8N594 471 aa10.49□□□□□ -0.73
USP48-203ENST00000374732 ABCC10Q5T3U5 1492 aa10.49□□□□□ -0.73
USP48-203ENST00000374732 PRXQ9BXM0 1461 aa10.49□□□□□ -0.73
USP48-203ENST00000374732 CALD1Q05682 793 aaKnown RBP10.48□□□□□ -0.73
USP48-203ENST00000374732 DIP2BQ9P265 1576 aa10.48□□□□□ -0.73
USP48-203ENST00000374732 MMP14P50281 582 aa10.47□□□□□ -0.73
USP48-203ENST00000374732 SUPT16HQ9Y5B9 1047 aaKnown RBP10.47□□□□□ -0.73
USP48-203ENST00000374732 KIAA0586Q9BVV6 1533 aa10.47□□□□□ -0.73
USP48-203ENST00000374732 SH3BP1Q9Y3L3 701 aa10.47□□□□□ -0.73
USP48-203ENST00000374732 TMCO4Q5TGY1 634 aa10.46□□□□□ -0.73
USP48-203ENST00000374732 RAPGEF2Q9Y4G8 1499 aa10.46□□□□□ -0.73
USP48-203ENST00000374732 E9PSI1 815 aa10.46□□□□□ -0.74
USP48-203ENST00000374732 CLIP1P30622 1438 aa10.45□□□□□ -0.74
USP48-203ENST00000374732 KIF27Q86VH2 1401 aa10.45□□□□□ -0.74
USP48-203ENST00000374732 TMEM51Q9NW97 253 aa10.45□□□□□ -0.74
USP48-203ENST00000374732 NEUROD2Q15784 382 aa10.44□□□□□ -0.74
USP48-203ENST00000374732 VPS8Q8N3P4 1428 aa10.43□□□□□ -0.74
USP48-203ENST00000374732 RIPOR2Q9Y4F9 1068 aa10.43□□□□□ -0.74
USP48-203ENST00000374732 SMARCA5O60264 1052 aaPredicted RBP10.42□□□□□ -0.74
USP48-203ENST00000374732 NOL8Q76FK4 1167 aaKnown RBP10.41□□□□□ -0.74
USP48-203ENST00000374732 GZF1Q9H116 711 aaPredicted RBP10.41□□□□□ -0.74
USP48-203ENST00000374732 AXDND1Q5T1B0 1012 aaPredicted RBP10.41□□□□□ -0.74
USP48-203ENST00000374732 VGFO15240 615 aaPredicted RBP10.4□□□□□ -0.74
USP48-203ENST00000374732 SPTY2D1Q68D10 685 aaPredicted RBP10.4□□□□□ -0.74
USP48-203ENST00000374732 CHMP7Q8WUX9 453 aaPredicted RBP10.4□□□□□ -0.74
USP48-203ENST00000374732 PSEN1P49768 467 aa10.39□□□□□ -0.75
USP48-203ENST00000374732 SEMA3FQ13275 785 aa10.39□□□□□ -0.75
USP48-203ENST00000374732 PKD2Q13563 968 aa10.39□□□□□ -0.75
USP48-203ENST00000374732 CCDC125Q86Z20 511 aa10.39□□□□□ -0.75
USP48-203ENST00000374732 TDRD9Q8NDG6 1382 aaKnown RBP10.38□□□□□ -0.75
USP48-203ENST00000374732 ADCY10Q96PN6 1610 aa10.38□□□□□ -0.75
USP48-203ENST00000374732 MAP3K4Q9Y6R4 1608 aa10.38□□□□□ -0.75
USP48-203ENST00000374732 PLB1Q6P1J6 1458 aa10.38□□□□□ -0.75
USP48-203ENST00000374732 UGGT2Q9NYU1 1516 aa10.37□□□□□ -0.75
USP48-203ENST00000374732 RGL3Q3MIN7 710 aa10.36□□□□□ -0.75
USP48-203ENST00000374732 SPINK5Q9NQ38 1064 aaPredicted RBP10.36□□□□□ -0.75
USP48-203ENST00000374732 IRF6O14896 467 aa10.36□□□□□ -0.75
USP48-203ENST00000374732 ERCC6L2Q5T890 1561 aa10.36□□□□□ -0.75
USP48-203ENST00000374732 CC2D1BQ5T0F9 858 aaKnown RBP10.35□□□□□ -0.75
USP48-203ENST00000374732 RINLQ6ZS11 566 aa10.35□□□□□ -0.75
USP48-203ENST00000374732 ARMCX6Q7L4S7 300 aa10.35□□□□□ -0.75
USP48-203ENST00000374732 EGFL6Q8IUX8 553 aa10.35□□□□□ -0.75
USP48-203ENST00000374732 CCDC82Q8N4S0 544 aa10.35□□□□□ -0.75
USP48-203ENST00000374732 C11orf95C9JLR9 678 aaPredicted RBP10.34□□□□□ -0.75
USP48-203ENST00000374732 HSP90AA1P07900 732 aaKnown RBP10.34□□□□□ -0.75
USP48-203ENST00000374732 PHLDB1Q86UU1 1377 aa10.34□□□□□ -0.75
USP48-203ENST00000374732 PPRC1Q5VV67 1664 aaKnown RBP10.34□□□□□ -0.75
USP48-203ENST00000374732 TEX14Q8IWB6 1497 aa10.34□□□□□ -0.75
USP48-203ENST00000374732 CFAP43Q8NDM7 1665 aa10.33□□□□□ -0.76
USP48-203ENST00000374732 IGF1RP08069 1367 aa10.33□□□□□ -0.76
USP48-203ENST00000374732 POLD1P28340 1107 aa10.33□□□□□ -0.76
USP48-203ENST00000374732 CYB5RLQ6IPT4 315 aa10.33□□□□□ -0.76
USP48-203ENST00000374732 APBB1IPQ7Z5R6 666 aaPredicted RBP10.32□□□□□ -0.76
USP48-203ENST00000374732 STK24Q9Y6E0 443 aa10.32□□□□□ -0.76
USP48-203ENST00000374732 FANCIQ9NVI1 1328 aa10.32□□□□□ -0.76
USP48-203ENST00000374732 ABCC2Q92887 1545 aa10.32□□□□□ -0.76
USP48-203ENST00000374732 KDM6BO15054 1643 aa10.32□□□□□ -0.76
USP48-203ENST00000374732 CARD10Q9BWT7 1032 aa10.32□□□□□ -0.76
USP48-203ENST00000374732 KDM5BQ9UGL1 1544 aa10.31□□□□□ -0.76
USP48-203ENST00000374732 TTC36A6NLP5 189 aa10.31□□□□□ -0.76
USP48-203ENST00000374732 NBPF1Q3BBV0 1214 aa10.31□□□□□ -0.76
USP48-203ENST00000374732 P3H3Q8IVL6 736 aa10.31□□□□□ -0.76
USP48-203ENST00000374732 NGEFQ8N5V2 710 aa10.31□□□□□ -0.76
USP48-203ENST00000374732 EVI5LQ96CN4 794 aa10.31□□□□□ -0.76
USP48-203ENST00000374732 NBPF11Q86T75 865 aa10.31□□□□□ -0.76
USP48-203ENST00000374732 GPBP1L1Q9HC44 474 aaPredicted RBP10.31□□□□□ -0.76
USP48-203ENST00000374732 ANP32BQ92688 251 aaKnown RBP10.31□□□□□ -0.76
USP48-203ENST00000374732 PRG4Q92954 1404 aaPredicted RBP10.3□□□□□ -0.76
USP48-203ENST00000374732 MAGI3Q5TCQ9 1506 aa10.29□□□□□ -0.76
USP48-203ENST00000374732 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP48-203ENST00000374732 MARCH6O60337 910 aa10.28□□□□□ -0.76
USP48-203ENST00000374732 NBPF20Q3BBV1 942 aa10.28□□□□□ -0.76
USP48-203ENST00000374732 SPRYD3Q8NCJ5 442 aa10.28□□□□□ -0.76
USP48-203ENST00000374732 IQGAP2Q13576 1575 aa10.28□□□□□ -0.76
USP48-203ENST00000374732 FOXD4Q12950 439 aaPredicted RBP10.28□□□□□ -0.76
USP48-203ENST00000374732 RBM27Q9P2N5 1060 aaKnown RBP10.28□□□□□ -0.76
USP48-203ENST00000374732 CARMIL2Q6F5E8 1435 aa10.28□□□□□ -0.76
USP48-203ENST00000374732 RBM26Q5T8P6 1007 aaKnown RBP10.28□□□□□ -0.76
USP48-203ENST00000374732 TSHZ1Q6ZSZ6 1077 aa10.28□□□□□ -0.76
USP48-203ENST00000374732 TERF2IPQ9NYB0 399 aa10.28□□□□□ -0.76
USP48-203ENST00000374732 CCDC96Q2M329 555 aa10.27□□□□□ -0.77
USP48-203ENST00000374732 CCER1Q8TC90 406 aaPredicted RBP10.27□□□□□ -0.77
USP48-203ENST00000374732 CARMIL1Q5VZK9 1371 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 114.6 ms