RNA–Protein interactions for RNA: ENST00000355072.9

HTT-201, Transcript of huntingtin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HTT, Length 13,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HTT-201ENST00000355072 CNTLNQ9NXG0 1405 aa9.84□□□□□ -0.83
HTT-201ENST00000355072 RGS3P49796 1198 aa9.83□□□□□ -0.84
HTT-201ENST00000355072 OS9Q13438 667 aaPredicted RBP9.83□□□□□ -0.84
HTT-201ENST00000355072 SUPT6HQ7KZ85 1726 aaKnown RBP9.83□□□□□ -0.84
HTT-201ENST00000355072 KIF2AO00139 706 aaPredicted RBP9.83□□□□□ -0.84
HTT-201ENST00000355072 HMGB1P1B2RPK0 211 aaPredicted RBP9.83□□□□□ -0.84
HTT-201ENST00000355072 PIP4K2AP48426 406 aaPredicted RBP9.83□□□□□ -0.84
HTT-201ENST00000355072 CCDC173Q0VFZ6 552 aa9.83□□□□□ -0.84
HTT-201ENST00000355072 RNF20Q5VTR2 975 aa9.83□□□□□ -0.84
HTT-201ENST00000355072 DDX11Q96FC9 970 aa9.83□□□□□ -0.84
HTT-201ENST00000355072 MCM2P49736 904 aa9.82□□□□□ -0.84
HTT-201ENST00000355072 MIA2Q96PC5 1412 aa9.82□□□□□ -0.84
HTT-201ENST00000355072 NPM1P06748 294 aaKnown RBP eCLIP9.82□□□□□ -0.84
HTT-201ENST00000355072 FAM184AQ8NB25 1140 aa9.82□□□□□ -0.84
HTT-201ENST00000355072 TUBB4BP68371 445 aa9.81□□□□□ -0.84
HTT-201ENST00000355072 ZNF777Q9ULD5 760 aaPredicted RBP9.81□□□□□ -0.84
HTT-201ENST00000355072 ERICH3Q5RHP9 1530 aa9.81□□□□□ -0.84
HTT-201ENST00000355072 LUC7LQ9NQ29 371 aaKnown RBP9.81□□□□□ -0.84
HTT-201ENST00000355072 CCDC7Q96M83 1385 aa9.81□□□□□ -0.84
HTT-201ENST00000355072 RTN4Q9NQC3 1192 aaKnown RBP9.8□□□□□ -0.84
HTT-201ENST00000355072 NAP1L2Q9ULW6 460 aaPredicted RBP9.8□□□□□ -0.84
HTT-201ENST00000355072 H0YHG0 523 aa9.8□□□□□ -0.84
HTT-201ENST00000355072 MCM3P25205 808 aa9.8□□□□□ -0.84
HTT-201ENST00000355072 ERLIN1O75477 346 aa9.8□□□□□ -0.84
HTT-201ENST00000355072 MBD3O95983 291 aa9.8□□□□□ -0.84
HTT-201ENST00000355072 ABCC8Q09428 1581 aa9.8□□□□□ -0.84
HTT-201ENST00000355072 RABEP1Q15276 862 aa9.8□□□□□ -0.84
HTT-201ENST00000355072 BECN2A8MW95 431 aa9.8□□□□□ -0.84
HTT-201ENST00000355072 EIF3JO75822 258 aaKnown RBP9.79□□□□□ -0.84
HTT-201ENST00000355072 PDCP20941 246 aa9.79□□□□□ -0.84
HTT-201ENST00000355072 VSIG10Q8N0Z9 540 aa9.79□□□□□ -0.84
HTT-201ENST00000355072 PODXL2Q9NZ53 605 aa9.79□□□□□ -0.84
HTT-201ENST00000355072 RSPH4AQ5TD94 716 aa9.79□□□□□ -0.84
HTT-201ENST00000355072 GOLGA6L10A0A0M3HER8 536 aa9.79□□□□□ -0.84
HTT-201ENST00000355072 DEF6Q9H4E7 631 aa9.79□□□□□ -0.84
HTT-201ENST00000355072 CCDC144AA2RUR9 1427 aa9.79□□□□□ -0.84
HTT-201ENST00000355072 NEFHP12036 1026 aa9.79□□□□□ -0.84
HTT-201ENST00000355072 MCM5P33992 734 aa9.78□□□□□ -0.84
HTT-201ENST00000355072 FEZ1Q99689 392 aa9.78□□□□□ -0.84
HTT-201ENST00000355072 U2SURPO15042 1029 aaKnown RBP9.78□□□□□ -0.84
HTT-201ENST00000355072 ANKRD18AQ8IVF6 992 aa9.78□□□□□ -0.84
HTT-201ENST00000355072 GOLGA6L10A6NI86 522 aa9.78□□□□□ -0.84
HTT-201ENST00000355072 RUFY2Q8WXA3 655 aa9.77□□□□□ -0.84
HTT-201ENST00000355072 MYBBP1AQ9BQG0 1328 aaKnown RBP9.77□□□□□ -0.85
HTT-201ENST00000355072 CFDP1Q9UEE9 299 aaPredicted RBP9.77□□□□□ -0.85
HTT-201ENST00000355072 POLA1P09884 1462 aaPredicted RBP9.76□□□□□ -0.85
HTT-201ENST00000355072 DDX49Q9Y6V7 483 aaKnown RBP9.76□□□□□ -0.85
HTT-201ENST00000355072 KIAA0754O94854 1291 aa9.76□□□□□ -0.85
HTT-201ENST00000355072 CT47B1P0C2W7 299 aaPredicted RBP9.76□□□□□ -0.85
HTT-201ENST00000355072 DDX19BQ9UMR2 479 aa9.76□□□□□ -0.85
HTT-201ENST00000355072 WASHC2AQ641Q2 1341 aa9.76□□□□□ -0.85
HTT-201ENST00000355072 WASHC2CQ9Y4E1 1318 aa9.76□□□□□ -0.85
HTT-201ENST00000355072 PLEKHD1A6NEE1 506 aa9.75□□□□□ -0.85
HTT-201ENST00000355072 STK11IPQ8N1F8 1099 aa9.75□□□□□ -0.85
HTT-201ENST00000355072 PLEKHH1Q9ULM0 1364 aa9.75□□□□□ -0.85
HTT-201ENST00000355072 CTR9Q6PD62 1173 aa9.75□□□□□ -0.85
HTT-201ENST00000355072 ATAD2Q6PL18 1390 aa9.75□□□□□ -0.85
HTT-201ENST00000355072 CENPJQ9HC77 1338 aaPredicted RBP9.74□□□□□ -0.85
HTT-201ENST00000355072 CAVIN2O95810 425 aa9.74□□□□□ -0.85
HTT-201ENST00000355072 LUZP1Q86V48 1076 aa9.74□□□□□ -0.85
HTT-201ENST00000355072 CHMP5Q9NZZ3 219 aa9.74□□□□□ -0.85
HTT-201ENST00000355072 FRAT1Q92837 279 aaPredicted RBP9.74□□□□□ -0.85
HTT-201ENST00000355072 E9PSI1 815 aa9.74□□□□□ -0.85
HTT-201ENST00000355072 KIF21AQ7Z4S6 1674 aa9.74□□□□□ -0.85
HTT-201ENST00000355072 CCDC47Q96A33 483 aaKnown RBP9.74□□□□□ -0.85
HTT-201ENST00000355072 GBP2P32456 591 aaPredicted RBP9.74□□□□□ -0.85
HTT-201ENST00000355072 CPLX2Q6PUV4 134 aaKnown RBP9.74□□□□□ -0.85
HTT-201ENST00000355072 SLKQ9H2G2 1235 aaPredicted RBP9.73□□□□□ -0.85
HTT-201ENST00000355072 SH3BGRP55822 239 aaPredicted RBP9.73□□□□□ -0.85
HTT-201ENST00000355072 DYDC1Q8WWB3 177 aa9.73□□□□□ -0.85
HTT-201ENST00000355072 TSHZ2Q9NRE2 1034 aa9.73□□□□□ -0.85
HTT-201ENST00000355072 DHX29Q7Z478 1369 aaKnown RBP9.73□□□□□ -0.85
HTT-201ENST00000355072 MAP9Q49MG5 647 aa9.73□□□□□ -0.85
HTT-201ENST00000355072 KIF3BO15066 747 aa9.72□□□□□ -0.85
HTT-201ENST00000355072 NASPP49321 788 aaPredicted RBP9.72□□□□□ -0.85
HTT-201ENST00000355072 ZKSCAN1P17029 563 aaPredicted RBP9.72□□□□□ -0.85
HTT-201ENST00000355072 CARMIL2Q6F5E8 1435 aa9.72□□□□□ -0.85
HTT-201ENST00000355072 ABCF1Q8NE71 845 aaKnown RBP eCLIP9.72□□□□□ -0.85
HTT-201ENST00000355072 TERF2IPQ9NYB0 399 aa9.72□□□□□ -0.85
HTT-201ENST00000355072 B4GALNT3Q6L9W6 998 aa9.71□□□□□ -0.85
HTT-201ENST00000355072 RTF1Q92541 710 aaKnown RBP9.71□□□□□ -0.85
HTT-201ENST00000355072 GZF1Q9H116 711 aaPredicted RBP9.71□□□□□ -0.85
HTT-201ENST00000355072 CALCOCO1Q9P1Z2 691 aa9.71□□□□□ -0.85
HTT-201ENST00000355072 EFCAB5A4FU69 1503 aa9.71□□□□□ -0.85
HTT-201ENST00000355072 CWC22Q9HCG8 908 aaKnown RBP9.71□□□□□ -0.86
HTT-201ENST00000355072 STK31Q9BXU1 1019 aa9.7□□□□□ -0.86
HTT-201ENST00000355072 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.7□□□□□ -0.86
HTT-201ENST00000355072 MFAP1P55081 439 aaKnown RBP9.7□□□□□ -0.86
HTT-201ENST00000355072 PPP1R15AO75807 674 aaPredicted RBP9.7□□□□□ -0.86
HTT-201ENST00000355072 ERLIN2O94905 339 aa9.7□□□□□ -0.86
HTT-201ENST00000355072 PDCL3Q9H2J4 239 aa9.7□□□□□ -0.86
HTT-201ENST00000355072 SALL2Q9Y467 1007 aaPredicted RBP9.7□□□□□ -0.86
HTT-201ENST00000355072 TUBB4AP04350 444 aa9.7□□□□□ -0.86
HTT-201ENST00000355072 HOMER1Q86YM7 354 aa9.7□□□□□ -0.86
HTT-201ENST00000355072 H3BQV1 296 aa9.7□□□□□ -0.86
HTT-201ENST00000355072 IFFO2Q5TF58 517 aa9.7□□□□□ -0.86
HTT-201ENST00000355072 SMARCA4P51532 1647 aa9.7□□□□□ -0.86
HTT-201ENST00000355072 ZNF428Q96B54 188 aa9.69□□□□□ -0.86
HTT-201ENST00000355072 FBLN2P98095 1184 aa9.69□□□□□ -0.86
HTT-201ENST00000355072 CIZ1Q9ULV3 898 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms