RNA–Protein interactions for RNA: ENST00000334218.9

CDC42BPA-201, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5 BASIC

Gene CDC42BPA, Length 10,134 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-201ENST00000334218 PDCL2Q8N4E4 241 aa7.48□□□□□ -1.21
CDC42BPA-201ENST00000334218 H0YHG0 523 aa7.48□□□□□ -1.21
CDC42BPA-201ENST00000334218 TPM4P67936 248 aa7.47□□□□□ -1.21
CDC42BPA-201ENST00000334218 CFAP53Q96M91 514 aa7.47□□□□□ -1.21
CDC42BPA-201ENST00000334218 ZMAT2Q96NC0 199 aaKnown RBP7.47□□□□□ -1.21
CDC42BPA-201ENST00000334218 SRPK2P78362 688 aaKnown RBP7.47□□□□□ -1.21
CDC42BPA-201ENST00000334218 KIF3AQ9Y496 699 aa7.47□□□□□ -1.21
CDC42BPA-201ENST00000334218 SEPT6Q14141 434 aa7.47□□□□□ -1.21
CDC42BPA-201ENST00000334218 PRM3Q9NNZ6 103 aa7.47□□□□□ -1.21
CDC42BPA-201ENST00000334218 NEUROD2Q15784 382 aa7.46□□□□□ -1.22
CDC42BPA-201ENST00000334218 LIMCH1Q9UPQ0 1083 aa7.46□□□□□ -1.22
CDC42BPA-201ENST00000334218 STK31Q9BXU1 1019 aa7.46□□□□□ -1.22
CDC42BPA-201ENST00000334218 CCDC34Q96HJ3 373 aa7.46□□□□□ -1.22
CDC42BPA-201ENST00000334218 ERCC4Q92889 916 aaPredicted RBP7.46□□□□□ -1.22
CDC42BPA-201ENST00000334218 NAP1L2Q9ULW6 460 aaPredicted RBP7.46□□□□□ -1.22
CDC42BPA-201ENST00000334218 TDO2P48775 406 aa7.45□□□□□ -1.22
CDC42BPA-201ENST00000334218 CSRNP3Q8WYN3 585 aa7.45□□□□□ -1.22
CDC42BPA-201ENST00000334218 DIAPH3Q9NSV4 1193 aa7.45□□□□□ -1.22
CDC42BPA-201ENST00000334218 FAM9BQ8IZU0 186 aa7.45□□□□□ -1.22
CDC42BPA-201ENST00000334218 HDAC1Q13547 482 aaPredicted RBP7.45□□□□□ -1.22
CDC42BPA-201ENST00000334218 HSP90B2PQ58FF3 399 aa7.45□□□□□ -1.22
CDC42BPA-201ENST00000334218 HSP90AB2PQ58FF8 381 aa7.45□□□□□ -1.22
CDC42BPA-201ENST00000334218 DHX8Q14562 1220 aaKnown RBP7.45□□□□□ -1.22
CDC42BPA-201ENST00000334218 RSPH4AQ5TD94 716 aa7.45□□□□□ -1.22
CDC42BPA-201ENST00000334218 MYH16Q9H6N6 1097 aa7.44□□□□□ -1.22
CDC42BPA-201ENST00000334218 NF2P35240 595 aa7.44□□□□□ -1.22
CDC42BPA-201ENST00000334218 SH2D4BQ5SQS7 431 aa7.44□□□□□ -1.22
CDC42BPA-201ENST00000334218 TMCO4Q5TGY1 634 aa7.44□□□□□ -1.22
CDC42BPA-201ENST00000334218 MYO6Q9UM54 1294 aa7.44□□□□□ -1.22
CDC42BPA-201ENST00000334218 LCA5Q86VQ0 697 aa7.44□□□□□ -1.22
CDC42BPA-201ENST00000334218 PRPF40AO75400 957 aaKnown RBP7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 MAP3K7CLP57077 242 aa7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 RAD21O60216 631 aa7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 FTSJ3Q8IY81 847 aaKnown RBP7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 DRC7Q8IY82 874 aa7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 KIF3CO14782 793 aa7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 U2SURPO15042 1029 aaKnown RBP7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 CCDC175P0C221 793 aa7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 ARID4AP29374 1257 aaPredicted RBP7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 WWC3Q9ULE0 1092 aa7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 RBM26Q5T8P6 1007 aaKnown RBP7.43□□□□□ -1.22
CDC42BPA-201ENST00000334218 RUFY1Q96T51 708 aa7.42□□□□□ -1.22
CDC42BPA-201ENST00000334218 DNAI2Q9GZS0 605 aa7.42□□□□□ -1.22
CDC42BPA-201ENST00000334218 TMEM132AQ24JP5 1023 aa7.42□□□□□ -1.22
CDC42BPA-201ENST00000334218 BBXQ8WY36 941 aaPredicted RBP7.42□□□□□ -1.22
CDC42BPA-201ENST00000334218 SYCP1Q15431 976 aa7.42□□□□□ -1.22
CDC42BPA-201ENST00000334218 POLE3Q9NRF9 147 aa7.42□□□□□ -1.22
CDC42BPA-201ENST00000334218 HSPA5P11021 654 aaKnown RBP7.42□□□□□ -1.22
CDC42BPA-201ENST00000334218 CCDC97Q96F63 343 aaPredicted RBP7.42□□□□□ -1.22
CDC42BPA-201ENST00000334218 KIAA0754O94854 1291 aa7.41□□□□□ -1.22
CDC42BPA-201ENST00000334218 ENOX2Q16206 610 aaKnown RBP7.41□□□□□ -1.22
CDC42BPA-201ENST00000334218 SKOR2Q2VWA4 1001 aaPredicted RBP7.41□□□□□ -1.22
CDC42BPA-201ENST00000334218 HSP90AB3PQ58FF7 597 aa7.41□□□□□ -1.22
CDC42BPA-201ENST00000334218 CCDC91Q7Z6B0 441 aa7.41□□□□□ -1.22
CDC42BPA-201ENST00000334218 TTLL5Q6EMB2 1281 aa7.41□□□□□ -1.22
CDC42BPA-201ENST00000334218 TERF2IPQ9NYB0 399 aa7.41□□□□□ -1.22
CDC42BPA-201ENST00000334218 SAFB2Q14151 953 aaKnown RBP eCLIP7.4□□□□□ -1.225e-6■■■□□ 16.3
CDC42BPA-201ENST00000334218 LMOD3Q0VAK6 560 aa7.4□□□□□ -1.22
CDC42BPA-201ENST00000334218 ABCC8Q09428 1581 aa7.4□□□□□ -1.23
CDC42BPA-201ENST00000334218 TPM3P06753 285 aa7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 PSMA4P25789 261 aaKnown RBP7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 AKAP17AQ02040 695 aaKnown RBP7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 LUZP1Q86V48 1076 aa7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 TRIM29Q14134 588 aa7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 DDX11L8A8MPP1 907 aa7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 TICAM2Q86XR7 235 aa7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 CDK5RAP3Q96JB5 506 aa7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 FAM43AQ8N2R8 423 aa7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 RMDN2Q96LZ7 410 aa7.39□□□□□ -1.23
CDC42BPA-201ENST00000334218 ZRANB2O95218 330 aaKnown RBP eCLIP7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 CCDC173Q0VFZ6 552 aa7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 IRX6P78412 446 aaPredicted RBP7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 PDCL3Q9H2J4 239 aa7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 FAM184BQ9ULE4 1060 aa7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 SATB2Q9UPW6 733 aa7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 CHMP4AQ9BY43 222 aa7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 KCNA4P22459 653 aa7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 PPFIBP2Q8ND30 876 aa7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 V9GYY5 206 aaPredicted RBP7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 BLVRAP53004 296 aa7.38□□□□□ -1.23
CDC42BPA-201ENST00000334218 CADPSQ9ULU8 1353 aa7.37□□□□□ -1.23
CDC42BPA-201ENST00000334218 OFD1O75665 1012 aa7.37□□□□□ -1.23
CDC42BPA-201ENST00000334218 TRHP20396 242 aaPredicted RBP7.37□□□□□ -1.23
CDC42BPA-201ENST00000334218 CCAR1Q8IX12 1150 aaKnown RBP7.37□□□□□ -1.23
CDC42BPA-201ENST00000334218 FEZ1Q99689 392 aa7.37□□□□□ -1.23
CDC42BPA-201ENST00000334218 HOXC8P31273 242 aa7.37□□□□□ -1.23
CDC42BPA-201ENST00000334218 GTF2A1P52655 376 aaPredicted RBP7.37□□□□□ -1.23
CDC42BPA-201ENST00000334218 KLHL10Q6JEL2 608 aa7.37□□□□□ -1.23
CDC42BPA-201ENST00000334218 RSF1Q96T23 1441 aaPredicted RBP7.37□□□□□ -1.23
CDC42BPA-201ENST00000334218 SREK1Q8WXA9 508 aaKnown RBP7.36□□□□□ -1.23
CDC42BPA-201ENST00000334218 RABEP2Q9H5N1 569 aa7.36□□□□□ -1.23
CDC42BPA-201ENST00000334218 SMC1AQ14683 1233 aaKnown RBP7.36□□□□□ -1.23
CDC42BPA-201ENST00000334218 GIGYF2Q6Y7W6 1299 aaKnown RBP7.36□□□□□ -1.23
CDC42BPA-201ENST00000334218 NUCB2P80303 420 aa7.36□□□□□ -1.23
CDC42BPA-201ENST00000334218 UTP3Q9NQZ2 479 aaKnown RBP eCLIP7.36□□□□□ -1.239e-7■■■■■ 149.5
CDC42BPA-201ENST00000334218 HSCBQ8IWL3 235 aa7.35□□□□□ -1.23
CDC42BPA-201ENST00000334218 CEP120Q8N960 986 aa7.35□□□□□ -1.23
CDC42BPA-201ENST00000334218 IFT57Q9NWB7 429 aa7.35□□□□□ -1.23
CDC42BPA-201ENST00000334218 ANAPC15P60006 121 aa7.35□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms