RNA–Protein interactions for RNA: ENST00000330374.6

VMA21-201, Transcript of VMA21, vacuolar ATPase assembly factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VMA21, Length 4,717 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMA21-201ENST00000330374 CFDP1Q9UEE9 299 aaPredicted RBP10.41□□□□□ -0.74
VMA21-201ENST00000330374 MYBBP1AQ9BQG0 1328 aaKnown RBP10.4□□□□□ -0.74
VMA21-201ENST00000330374 BCORL1Q5H9F3 1711 aa10.4□□□□□ -0.74
VMA21-201ENST00000330374 ABCC5O15440 1437 aa10.4□□□□□ -0.74
VMA21-201ENST00000330374 RGL3Q3MIN7 710 aa10.39□□□□□ -0.75
VMA21-201ENST00000330374 KIF15Q9NS87 1388 aa10.39□□□□□ -0.75
VMA21-201ENST00000330374 SAMD9Q5K651 1589 aa10.39□□□□□ -0.75
VMA21-201ENST00000330374 THOC2Q8NI27 1593 aaKnown RBP10.39□□□□□ -0.75
VMA21-201ENST00000330374 C20orf194Q5TEA3 1177 aa10.38□□□□□ -0.75
VMA21-201ENST00000330374 MIA2Q96PC5 1412 aa10.38□□□□□ -0.75
VMA21-201ENST00000330374 PLEKHG5O94827 1062 aa10.38□□□□□ -0.75
VMA21-201ENST00000330374 RGS3P49796 1198 aa10.38□□□□□ -0.75
VMA21-201ENST00000330374 ARHGEF11O15085 1522 aa10.38□□□□□ -0.75
VMA21-201ENST00000330374 NFKBIBQ15653 356 aa10.38□□□□□ -0.75
VMA21-201ENST00000330374 GSE1Q14687 1217 aa10.36□□□□□ -0.75
VMA21-201ENST00000330374 USP35Q9P2H5 1018 aa10.36□□□□□ -0.75
VMA21-201ENST00000330374 RALBP1Q15311 655 aa10.36□□□□□ -0.75
VMA21-201ENST00000330374 FRAT1Q92837 279 aaPredicted RBP10.36□□□□□ -0.75
VMA21-201ENST00000330374 URB2Q14146 1524 aaKnown RBP10.36□□□□□ -0.75
VMA21-201ENST00000330374 NLRP13Q86W25 1043 aa10.35□□□□□ -0.75
VMA21-201ENST00000330374 BRD4O60885 1362 aaPredicted RBP10.35□□□□□ -0.75
VMA21-201ENST00000330374 NUP155O75694 1391 aa10.35□□□□□ -0.75
VMA21-201ENST00000330374 MS4A1P11836 297 aa10.35□□□□□ -0.75
VMA21-201ENST00000330374 DDRGK1Q96HY6 314 aa10.35□□□□□ -0.75
VMA21-201ENST00000330374 BBXQ8WY36 941 aaPredicted RBP10.35□□□□□ -0.75
VMA21-201ENST00000330374 SPDYE4A6NLX3 237 aa10.35□□□□□ -0.75
VMA21-201ENST00000330374 PZPP20742 1482 aa10.34□□□□□ -0.75
VMA21-201ENST00000330374 LRPPRCP42704 1394 aaKnown RBP10.34□□□□□ -0.75
VMA21-201ENST00000330374 KTN1Q86UP2 1357 aaKnown RBP10.34□□□□□ -0.75
VMA21-201ENST00000330374 ATXN8OSP0DMR3 200 aa10.33□□□□□ -0.75
VMA21-201ENST00000330374 TMEM132AQ24JP5 1023 aa10.33□□□□□ -0.75
VMA21-201ENST00000330374 ROCK2O75116 1388 aaKnown RBP10.33□□□□□ -0.76
VMA21-201ENST00000330374 ROCK1Q13464 1354 aa10.33□□□□□ -0.76
VMA21-201ENST00000330374 KIAA1107Q9UPP5 1409 aa10.33□□□□□ -0.76
VMA21-201ENST00000330374 ABCA5Q8WWZ7 1642 aa10.33□□□□□ -0.76
VMA21-201ENST00000330374 DNAJC5BQ9UF47 199 aa10.33□□□□□ -0.76
VMA21-201ENST00000330374 PDS5BQ9NTI5 1447 aa10.33□□□□□ -0.76
VMA21-201ENST00000330374 FRAT2O75474 233 aaPredicted RBP10.32□□□□□ -0.76
VMA21-201ENST00000330374 MAPK8IP2Q13387 824 aaPredicted RBP10.32□□□□□ -0.76
VMA21-201ENST00000330374 NBPF1Q3BBV0 1214 aa10.32□□□□□ -0.76
VMA21-201ENST00000330374 LAMC3Q9Y6N6 1575 aa10.32□□□□□ -0.76
VMA21-201ENST00000330374 PRG4Q92954 1404 aaPredicted RBP10.31□□□□□ -0.76
VMA21-201ENST00000330374 WASHC2CQ9Y4E1 1318 aa10.31□□□□□ -0.76
VMA21-201ENST00000330374 ARID4BQ4LE39 1312 aaPredicted RBP10.31□□□□□ -0.76
VMA21-201ENST00000330374 PDE3BQ13370 1112 aa10.31□□□□□ -0.76
VMA21-201ENST00000330374 POLR1AO95602 1720 aaPredicted RBP10.3□□□□□ -0.76
VMA21-201ENST00000330374 PANK3Q9H999 370 aa10.3□□□□□ -0.76
VMA21-201ENST00000330374 NEUROD2Q15784 382 aa10.3□□□□□ -0.76
VMA21-201ENST00000330374 KDM5CP41229 1560 aa10.29□□□□□ -0.76
VMA21-201ENST00000330374 ADAMTS8Q9UP79 889 aa10.28□□□□□ -0.76
VMA21-201ENST00000330374 MBD5Q9P267 1494 aa10.28□□□□□ -0.76
VMA21-201ENST00000330374 ANKRD30AQ9BXX3 1397 aa10.28□□□□□ -0.76
VMA21-201ENST00000330374 ANKRD50Q9ULJ7 1429 aa10.28□□□□□ -0.76
VMA21-201ENST00000330374 DNMT1P26358 1616 aaKnown RBP10.27□□□□□ -0.76
VMA21-201ENST00000330374 IQGAP2Q13576 1575 aa10.27□□□□□ -0.77
VMA21-201ENST00000330374 WDR62O43379 1518 aa10.27□□□□□ -0.77
VMA21-201ENST00000330374 CAMSAP2Q08AD1 1489 aa10.27□□□□□ -0.77
VMA21-201ENST00000330374 ZBTB7CA1YPR0 619 aa10.27□□□□□ -0.77
VMA21-201ENST00000330374 TSPY4P0CV99 314 aa10.27□□□□□ -0.77
VMA21-201ENST00000330374 TSPY10P0CW01 314 aa10.27□□□□□ -0.77
VMA21-201ENST00000330374 HNRNPMP52272 730 aaKnown RBP eCLIP10.27□□□□□ -0.77
VMA21-201ENST00000330374 WDR70Q9NW82 654 aa10.27□□□□□ -0.77
VMA21-201ENST00000330374 FAM161AQ3B820 660 aa10.26□□□□□ -0.77
VMA21-201ENST00000330374 CCDC146Q8IYE0 955 aa10.26□□□□□ -0.77
VMA21-201ENST00000330374 WDR43Q15061 677 aaKnown RBP eCLIP10.26□□□□□ -0.77
VMA21-201ENST00000330374 SLKQ9H2G2 1235 aaPredicted RBP10.26□□□□□ -0.77
VMA21-201ENST00000330374 KIF14Q15058 1648 aa10.26□□□□□ -0.77
VMA21-201ENST00000330374 RALGAPBQ86X10 1494 aa10.25□□□□□ -0.77
VMA21-201ENST00000330374 PER1O15534 1290 aaPredicted RBP10.25□□□□□ -0.77
VMA21-201ENST00000330374 C8orf34Q49A92 452 aa10.24□□□□□ -0.77
VMA21-201ENST00000330374 CENPQQ7L2Z9 268 aaPredicted RBP10.24□□□□□ -0.77
VMA21-201ENST00000330374 PARD3Q8TEW0 1356 aa10.24□□□□□ -0.77
VMA21-201ENST00000330374 NUP153P49790 1475 aaKnown RBP10.24□□□□□ -0.77
VMA21-201ENST00000330374 KIAA0586Q9BVV6 1533 aa10.23□□□□□ -0.77
VMA21-201ENST00000330374 DISP3Q9P2K9 1392 aa10.23□□□□□ -0.77
VMA21-201ENST00000330374 KDM2BQ8NHM5 1336 aa10.22□□□□□ -0.77
VMA21-201ENST00000330374 POGKQ9P215 609 aa10.22□□□□□ -0.77
VMA21-201ENST00000330374 BCAR3O75815 825 aa10.21□□□□□ -0.77
VMA21-201ENST00000330374 CANXP27824 592 aaKnown RBP10.21□□□□□ -0.78
VMA21-201ENST00000330374 GOLGA2Q08379 1002 aa10.21□□□□□ -0.78
VMA21-201ENST00000330374 KIF21AQ7Z4S6 1674 aa10.21□□□□□ -0.78
VMA21-201ENST00000330374 PLEKHD1A6NEE1 506 aa10.21□□□□□ -0.78
VMA21-201ENST00000330374 DUSP27Q5VZP5 1158 aa10.21□□□□□ -0.78
VMA21-201ENST00000330374 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.21□□□□□ -0.78
VMA21-201ENST00000330374 KNSTRNQ9Y448 316 aa10.21□□□□□ -0.78
VMA21-201ENST00000330374 PLEKHH1Q9ULM0 1364 aa10.2□□□□□ -0.78
VMA21-201ENST00000330374 GPATCH8Q9UKJ3 1502 aaKnown RBP10.2□□□□□ -0.78
VMA21-201ENST00000330374 UHRF1BP1Q6BDS2 1440 aa10.2□□□□□ -0.78
VMA21-201ENST00000330374 PLB1Q6P1J6 1458 aa10.2□□□□□ -0.78
VMA21-201ENST00000330374 TMF1P82094 1093 aa10.2□□□□□ -0.78
VMA21-201ENST00000330374 TROQ12816 1431 aaPredicted RBP10.2□□□□□ -0.78
VMA21-201ENST00000330374 RNF216Q9NWF9 866 aaPredicted RBP10.19□□□□□ -0.78
VMA21-201ENST00000330374 SEC24BO95487 1268 aa10.19□□□□□ -0.78
VMA21-201ENST00000330374 SPINK5Q9NQ38 1064 aaPredicted RBP10.18□□□□□ -0.78
VMA21-201ENST00000330374 C9orf84Q5VXU9 1444 aa10.18□□□□□ -0.78
VMA21-201ENST00000330374 APAF1O14727 1248 aa10.18□□□□□ -0.78
VMA21-201ENST00000330374 SPOCK2Q92563 424 aa10.18□□□□□ -0.78
VMA21-201ENST00000330374 IGHDP01880 384 aa10.18□□□□□ -0.78
VMA21-201ENST00000330374 PPP2R1AP30153 589 aa10.18□□□□□ -0.78
VMA21-201ENST00000330374 TESK2Q96S53 571 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms