RNA–Protein interactions for RNA: ENST00000322535.10

SF3B2-201, Transcript of splicing factor 3b subunit 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B2, Length 2,903 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B2-201ENST00000322535 SYCP2Q9BX26 1530 aa13.8□□□□□ -0.2
SF3B2-201ENST00000322535 DNMT1P26358 1616 aaKnown RBP13.8□□□□□ -0.2
SF3B2-201ENST00000322535 ITSN2Q9NZM3 1697 aa13.8□□□□□ -0.2
SF3B2-201ENST00000322535 UHRF1BP1LA0JNW5 1464 aa13.8□□□□□ -0.2
SF3B2-201ENST00000322535 SAMD9LQ8IVG5 1584 aa13.8□□□□□ -0.2
SF3B2-201ENST00000322535 C9orf84Q5VXU9 1444 aa13.79□□□□□ -0.2
SF3B2-201ENST00000322535 AKNAQ7Z591 1439 aa13.79□□□□□ -0.2
SF3B2-201ENST00000322535 WDR7Q9Y4E6 1490 aa13.79□□□□□ -0.2
SF3B2-201ENST00000322535 CHMP4BQ9H444 224 aaKnown RBP13.79□□□□□ -0.2
SF3B2-201ENST00000322535 FAM43AQ8N2R8 423 aa13.78□□□□□ -0.2
SF3B2-201ENST00000322535 ARHGEF12Q9NZN5 1544 aa13.78□□□□□ -0.2
SF3B2-201ENST00000322535 NAP1L2Q9ULW6 460 aaPredicted RBP13.78□□□□□ -0.2
SF3B2-201ENST00000322535 ANKRD30AQ9BXX3 1397 aa13.78□□□□□ -0.2
SF3B2-201ENST00000322535 MBD5Q9P267 1494 aa13.77□□□□□ -0.2
SF3B2-201ENST00000322535 RRP9O43818 475 aaKnown RBP13.77□□□□□ -0.21
SF3B2-201ENST00000322535 KIF15Q9NS87 1388 aa13.77□□□□□ -0.21
SF3B2-201ENST00000322535 DHX37Q8IY37 1157 aaKnown RBP13.77□□□□□ -0.21
SF3B2-201ENST00000322535 PRDM4Q9UKN5 801 aa13.77□□□□□ -0.21
SF3B2-201ENST00000322535 TRAPPC8Q9Y2L5 1435 aa13.76□□□□□ -0.21
SF3B2-201ENST00000322535 CCER2I3L3R5 266 aa13.76□□□□□ -0.21
SF3B2-201ENST00000322535 RGS3P49796 1198 aa13.76□□□□□ -0.21
SF3B2-201ENST00000322535 PLCH2O75038 1416 aa13.76□□□□□ -0.21
SF3B2-201ENST00000322535 PKD2Q13563 968 aa13.75□□□□□ -0.21
SF3B2-201ENST00000322535 DENND4BO75064 1496 aaPredicted RBP13.75□□□□□ -0.21
SF3B2-201ENST00000322535 ANKRD50Q9ULJ7 1429 aa13.75□□□□□ -0.21
SF3B2-201ENST00000322535 PPP1R15AO75807 674 aaPredicted RBP13.74□□□□□ -0.21
SF3B2-201ENST00000322535 BBXQ8WY36 941 aaPredicted RBP13.74□□□□□ -0.21
SF3B2-201ENST00000322535 NUP155O75694 1391 aa13.74□□□□□ -0.21
SF3B2-201ENST00000322535 PREX2Q70Z35 1606 aa13.74□□□□□ -0.21
SF3B2-201ENST00000322535 RAPGEF3O95398 923 aa13.74□□□□□ -0.21
SF3B2-201ENST00000322535 RIMBP3CA6NJZ7 1639 aa13.73□□□□□ -0.21
SF3B2-201ENST00000322535 RIMBP3BA6NNM3 1639 aa13.73□□□□□ -0.21
SF3B2-201ENST00000322535 RIMBP3Q9UFD9 1639 aa13.73□□□□□ -0.21
SF3B2-201ENST00000322535 ROCK1Q13464 1354 aa13.73□□□□□ -0.21
SF3B2-201ENST00000322535 FAM69CQ0P6D2 419 aa13.73□□□□□ -0.21
SF3B2-201ENST00000322535 MYO5CQ9NQX4 1742 aa13.73□□□□□ -0.21
SF3B2-201ENST00000322535 ZNF326Q5BKZ1 582 aaKnown RBP13.72□□□□□ -0.21
SF3B2-201ENST00000322535 TONSLQ96HA7 1378 aa13.72□□□□□ -0.21
SF3B2-201ENST00000322535 ARXQ96QS3 562 aa13.72□□□□□ -0.21
SF3B2-201ENST00000322535 FANCAO15360 1455 aa13.72□□□□□ -0.21
SF3B2-201ENST00000322535 CCDC141Q6ZP82 1450 aa13.72□□□□□ -0.21
SF3B2-201ENST00000322535 GSE1Q14687 1217 aa13.71□□□□□ -0.21
SF3B2-201ENST00000322535 SPAG9O60271 1321 aaKnown RBP13.71□□□□□ -0.21
SF3B2-201ENST00000322535 SCAPERQ9BY12 1400 aa13.7□□□□□ -0.22
SF3B2-201ENST00000322535 GCC2Q8IWJ2 1684 aa13.7□□□□□ -0.22
SF3B2-201ENST00000322535 CD109Q6YHK3 1445 aa13.69□□□□□ -0.22
SF3B2-201ENST00000322535 GTF2E1P29083 439 aaPredicted RBP13.69□□□□□ -0.22
SF3B2-201ENST00000322535 USP35Q9P2H5 1018 aa13.69□□□□□ -0.22
SF3B2-201ENST00000322535 HSP90AA1P07900 732 aaKnown RBP13.69□□□□□ -0.22
SF3B2-201ENST00000322535 FRAT1Q92837 279 aaPredicted RBP13.68□□□□□ -0.22
SF3B2-201ENST00000322535 L3MBTL2Q969R5 705 aa13.67□□□□□ -0.22
SF3B2-201ENST00000322535 PLEKHH2Q8IVE3 1493 aa13.67□□□□□ -0.22
SF3B2-201ENST00000322535 DCAF11Q8TEB1 546 aa13.67□□□□□ -0.22
SF3B2-201ENST00000322535 RRAGDQ9NQL2 400 aaPredicted RBP13.67□□□□□ -0.22
SF3B2-201ENST00000322535 CROCC2H7BZ55 1655 aa13.66□□□□□ -0.22
SF3B2-201ENST00000322535 ADGRL1O94910 1474 aa13.66□□□□□ -0.22
SF3B2-201ENST00000322535 KDM2AQ9Y2K7 1162 aa13.66□□□□□ -0.22
SF3B2-201ENST00000322535 KIF3BO15066 747 aa13.65□□□□□ -0.22
SF3B2-201ENST00000322535 RGL3Q3MIN7 710 aa13.65□□□□□ -0.22
SF3B2-201ENST00000322535 RSPH4AQ5TD94 716 aa13.65□□□□□ -0.22
SF3B2-201ENST00000322535 NAP1L5Q96NT1 182 aaPredicted RBP13.65□□□□□ -0.22
SF3B2-201ENST00000322535 PZPP20742 1482 aa13.64□□□□□ -0.23
SF3B2-201ENST00000322535 FAM9BQ8IZU0 186 aa13.64□□□□□ -0.23
SF3B2-201ENST00000322535 SENP3-EIF4A1A0A087X0R7 540 aa13.64□□□□□ -0.23
SF3B2-201ENST00000322535 ADGRL2O95490 1459 aa13.64□□□□□ -0.23
SF3B2-201ENST00000322535 CHMP4AQ9BY43 222 aa13.63□□□□□ -0.23
SF3B2-201ENST00000322535 ADGBQ8N7X0 1667 aa13.63□□□□□ -0.23
SF3B2-201ENST00000322535 PPM1GO15355 546 aaPredicted RBP13.63□□□□□ -0.23
SF3B2-201ENST00000322535 GGT6Q6P531 493 aa13.62□□□□□ -0.23
SF3B2-201ENST00000322535 ABCC1P33527 1531 aa13.62□□□□□ -0.23
SF3B2-201ENST00000322535 SENP3Q9H4L4 574 aaPredicted RBP13.62□□□□□ -0.23
SF3B2-201ENST00000322535 ANKRD30BQ9BXX2 1392 aa13.62□□□□□ -0.23
SF3B2-201ENST00000322535 KIAA1107Q9UPP5 1409 aa13.62□□□□□ -0.23
SF3B2-201ENST00000322535 ARHGEF5Q12774 1597 aa13.61□□□□□ -0.23
SF3B2-201ENST00000322535 ARID4BQ4LE39 1312 aaPredicted RBP13.61□□□□□ -0.23
SF3B2-201ENST00000322535 STAC3Q96MF2 364 aa13.6□□□□□ -0.23
SF3B2-201ENST00000322535 TSPOAP1O95153 1857 aa13.6□□□□□ -0.23
SF3B2-201ENST00000322535 ABCA9Q8IUA7 1624 aa13.6□□□□□ -0.23
SF3B2-201ENST00000322535 SHANK2Q9UPX8 1470 aa13.6□□□□□ -0.23
SF3B2-201ENST00000322535 SLC4A3P48751 1232 aa13.6□□□□□ -0.23
SF3B2-201ENST00000322535 CALD1Q05682 793 aaKnown RBP13.59□□□□□ -0.23
SF3B2-201ENST00000322535 NBPF8Q3BBV2 869 aa13.59□□□□□ -0.23
SF3B2-201ENST00000322535 NFKBIBQ15653 356 aa13.57□□□□□ -0.24
SF3B2-201ENST00000322535 CNGB1Q14028 1251 aaPredicted RBP13.57□□□□□ -0.24
SF3B2-201ENST00000322535 IPO4Q8TEX9 1081 aaKnown RBP13.56□□□□□ -0.24
SF3B2-201ENST00000322535 TRHP20396 242 aaPredicted RBP13.55□□□□□ -0.24
SF3B2-201ENST00000322535 CCDC184Q52MB2 194 aa13.55□□□□□ -0.24
SF3B2-201ENST00000322535 MLECQ14165 292 aa13.54□□□□□ -0.24
SF3B2-201ENST00000322535 CANXP27824 592 aaKnown RBP13.53□□□□□ -0.24
SF3B2-201ENST00000322535 BRD2P25440 801 aaKnown RBP13.53□□□□□ -0.24
SF3B2-201ENST00000322535 FAM135AQ9P2D6 1515 aa13.53□□□□□ -0.24
SF3B2-201ENST00000322535 ZFYVE16Q7Z3T8 1539 aa13.52□□□□□ -0.25
SF3B2-201ENST00000322535 POLR3GLQ9BT43 218 aa13.52□□□□□ -0.25
SF3B2-201ENST00000322535 ATP7AQ04656 1500 aa13.51□□□□□ -0.25
SF3B2-201ENST00000322535 PLCD3Q8N3E9 789 aa13.51□□□□□ -0.25
SF3B2-201ENST00000322535 ZFP91Q96JP5 570 aaPredicted RBP13.51□□□□□ -0.25
SF3B2-201ENST00000322535 RPRD2Q5VT52 1461 aaKnown RBP13.5□□□□□ -0.25
SF3B2-201ENST00000322535 CFAP65Q6ZU64 1925 aaKnown RBP13.5□□□□□ -0.25
SF3B2-201ENST00000322535 DUOX2Q9NRD8 1548 aa13.5□□□□□ -0.25
SF3B2-201ENST00000322535 CHGAP10645 457 aaKnown RBP13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms