RNA–Protein interactions for RNA: ENST00000308987.5

CKS1B-201, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CKS1B, Length 759 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-201ENST00000308987 DNAJC5Q9H3Z4 198 aa9.85□□□□□ -0.83
CKS1B-201ENST00000308987 PPP1R3GB7ZBB8 358 aa9.84□□□□□ -0.83
CKS1B-201ENST00000308987 COL9A1P20849 921 aa9.84□□□□□ -0.83
CKS1B-201ENST00000308987 MAP3K9P80192 1104 aa9.83□□□□□ -0.84
CKS1B-201ENST00000308987 RYDENQ9NUL5 291 aaKnown RBP9.83□□□□□ -0.84
CKS1B-201ENST00000308987 PCDHGA10Q9Y5H3 936 aa9.83□□□□□ -0.84
CKS1B-201ENST00000308987 SOWAHBA6NEL2 793 aa9.82□□□□□ -0.84
CKS1B-201ENST00000308987 LARP6Q9BRS8 491 aaKnown RBP9.81□□□□□ -0.84
CKS1B-201ENST00000308987 LAPTM4BQ86VI4 370 aa9.8□□□□□ -0.84
CKS1B-201ENST00000308987 KCNC4Q03721 635 aa9.79□□□□□ -0.84
CKS1B-201ENST00000308987 NYAP1Q6ZVC0 841 aa9.79□□□□□ -0.84
CKS1B-201ENST00000308987 WBP1LQ9NX94 342 aa9.79□□□□□ -0.84
CKS1B-201ENST00000308987 KIAA1468Q9P260 1216 aa9.79□□□□□ -0.84
CKS1B-201ENST00000308987 DDX27Q96GQ7 796 aaKnown RBP9.78□□□□□ -0.84
CKS1B-201ENST00000308987 ZFRQ96KR1 1074 aaKnown RBP9.78□□□□□ -0.84
CKS1B-201ENST00000308987 EMILIN3Q9NT22 766 aa9.77□□□□□ -0.85
CKS1B-201ENST00000308987 TYW1BQ6NUM6 668 aa9.76□□□□□ -0.85
CKS1B-201ENST00000308987 FBXW7Q969H0 707 aa9.75□□□□□ -0.85
CKS1B-201ENST00000308987 ZCCHC6Q5VYS8 1495 aaKnown RBP9.74□□□□□ -0.85
CKS1B-201ENST00000308987 MFSD10Q14728 455 aa9.74□□□□□ -0.85
CKS1B-201ENST00000308987 LCE2BO14633 110 aa9.73□□□□□ -0.85
CKS1B-201ENST00000308987 ONECUT3O60422 494 aaPredicted RBP9.73□□□□□ -0.85
CKS1B-201ENST00000308987 PHF14O94880 888 aa9.73□□□□□ -0.85
CKS1B-201ENST00000308987 SEPT9Q9UHD8 586 aaPredicted RBP9.73□□□□□ -0.85
CKS1B-201ENST00000308987 CC2D2AQ9P2K1 1620 aa9.73□□□□□ -0.85
CKS1B-201ENST00000308987 LAPTM4AQ15012 233 aa9.72□□□□□ -0.85
CKS1B-201ENST00000308987 DCAF1Q9Y4B6 1507 aa9.71□□□□□ -0.86
CKS1B-201ENST00000308987 GTPBP6O43824 516 aaPredicted RBP9.7□□□□□ -0.86
CKS1B-201ENST00000308987 GFRA3O60609 400 aa9.7□□□□□ -0.86
CKS1B-201ENST00000308987 C6orf132Q5T0Z8 1188 aa9.7□□□□□ -0.86
CKS1B-201ENST00000308987 TRAF7Q6Q0C0 670 aa9.7□□□□□ -0.86
CKS1B-201ENST00000308987 SCRIBQ14160 1630 aa9.69□□□□□ -0.86
CKS1B-201ENST00000308987 TSR3Q9UJK0 312 aaKnown RBP9.69□□□□□ -0.86
CKS1B-201ENST00000308987 FAM98CQ17RN3 349 aaKnown RBP9.68□□□□□ -0.86
CKS1B-201ENST00000308987 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.68□□□□□ -0.86
CKS1B-201ENST00000308987 HPS5Q9UPZ3 1129 aa9.68□□□□□ -0.86
CKS1B-201ENST00000308987 SHROOM4Q9ULL8 1493 aa9.67□□□□□ -0.86
CKS1B-201ENST00000308987 TRIM6-TRIM34B2RNG4 842 aa9.67□□□□□ -0.86
CKS1B-201ENST00000308987 CECR2Q9BXF3 1484 aa9.66□□□□□ -0.86
CKS1B-201ENST00000308987 EPAS1Q99814 870 aa9.66□□□□□ -0.86
CKS1B-201ENST00000308987 EIF4G1Q04637 1599 aaKnown RBP9.66□□□□□ -0.86
CKS1B-201ENST00000308987 LRCH3Q96II8 777 aa9.65□□□□□ -0.86
CKS1B-201ENST00000308987 RBM33Q96EV2 1170 aaKnown RBP9.63□□□□□ -0.87
CKS1B-201ENST00000308987 PRKD2Q9BZL6 878 aa9.61□□□□□ -0.87
CKS1B-201ENST00000308987 PPP4CP60510 307 aa9.6□□□□□ -0.87
CKS1B-201ENST00000308987 TJAP1Q5JTD0 557 aa9.6□□□□□ -0.87
CKS1B-201ENST00000308987 CADPS2Q86UW7 1296 aa9.59□□□□□ -0.87
CKS1B-201ENST00000308987 NRG2O14511 850 aaPredicted RBP9.58□□□□□ -0.88
CKS1B-201ENST00000308987 DPYSL4O14531 572 aa9.57□□□□□ -0.88
CKS1B-201ENST00000308987 PACS2Q86VP3 889 aa9.57□□□□□ -0.88
CKS1B-201ENST00000308987 TSKSQ9UJT2 592 aa9.57□□□□□ -0.88
CKS1B-201ENST00000308987 CAMK2BQ13554 666 aa9.56□□□□□ -0.88
CKS1B-201ENST00000308987 DDX12PQ92771 950 aa9.56□□□□□ -0.88
CKS1B-201ENST00000308987 PPP1R18Q6NYC8 613 aa9.54□□□□□ -0.88
CKS1B-201ENST00000308987 SAMD7Q7Z3H4 446 aa9.53□□□□□ -0.88
CKS1B-201ENST00000308987 MTRQ99707 1265 aa9.53□□□□□ -0.88
CKS1B-201ENST00000308987 V9GY48 417 aaPredicted RBP9.53□□□□□ -0.88
CKS1B-201ENST00000308987 TSR1Q2NL82 804 aaKnown RBP9.52□□□□□ -0.89
CKS1B-201ENST00000308987 ZNF787Q6DD87 383 aa9.52□□□□□ -0.89
CKS1B-201ENST00000308987 IL21Q9HBE4 155 aa9.52□□□□□ -0.89
CKS1B-201ENST00000308987 SMAPO00193 183 aa9.51□□□□□ -0.89
CKS1B-201ENST00000308987 MAP3K7O43318 606 aa9.5□□□□□ -0.89
CKS1B-201ENST00000308987 EN1Q05925 392 aaPredicted RBP9.5□□□□□ -0.89
CKS1B-201ENST00000308987 ZNF516Q92618 1163 aa9.5□□□□□ -0.89
CKS1B-201ENST00000308987 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.5□□□□□ -0.89
CKS1B-201ENST00000308987 NBR1Q14596 966 aa9.48□□□□□ -0.89
CKS1B-201ENST00000308987 FAM198AQ9UFP1 575 aa9.48□□□□□ -0.89
CKS1B-201ENST00000308987 PDZRN3Q9UPQ7 1066 aa9.48□□□□□ -0.89
CKS1B-201ENST00000308987 C3orf80F5H4A9 247 aa9.47□□□□□ -0.89
CKS1B-201ENST00000308987 CDCA7LQ96GN5 454 aa9.47□□□□□ -0.89
CKS1B-201ENST00000308987 PRSS12P56730 875 aa9.46□□□□□ -0.9
CKS1B-201ENST00000308987 NKX2-3Q8TAU0 364 aa9.45□□□□□ -0.9
CKS1B-201ENST00000308987 ZNF775Q96BV0 537 aaPredicted RBP9.45□□□□□ -0.9
CKS1B-201ENST00000308987 TATDN2Q93075 761 aa9.44□□□□□ -0.9
CKS1B-201ENST00000308987 APLP1P51693 650 aa9.42□□□□□ -0.9
CKS1B-201ENST00000308987 PNMA3Q9UL41 463 aa9.42□□□□□ -0.9
CKS1B-201ENST00000308987 PDIA6Q15084 440 aa9.4□□□□□ -0.9
CKS1B-201ENST00000308987 NBPF26B4DH59 902 aa9.39□□□□□ -0.91
CKS1B-201ENST00000308987 RNF40O75150 1001 aa9.39□□□□□ -0.91
CKS1B-201ENST00000308987 PRIM1P49642 420 aaKnown RBP9.39□□□□□ -0.91
CKS1B-201ENST00000308987 HDGFP51858 240 aaKnown RBP9.39□□□□□ -0.91
CKS1B-201ENST00000308987 CERKQ8TCT0 537 aa9.39□□□□□ -0.91
CKS1B-201ENST00000308987 SPDYE16A6NNV3 312 aaPredicted RBP9.37□□□□□ -0.91
CKS1B-201ENST00000308987 GGCXP38435 758 aa9.37□□□□□ -0.91
CKS1B-201ENST00000308987 NUDT18Q6ZVK8 323 aa9.37□□□□□ -0.91
CKS1B-201ENST00000308987 COPS2P61201 443 aa9.36□□□□□ -0.91
CKS1B-201ENST00000308987 TMUB1Q9BVT8 246 aa9.36□□□□□ -0.91
CKS1B-201ENST00000308987 TRIM67Q6ZTA4 783 aa9.34□□□□□ -0.91
CKS1B-201ENST00000308987 GRXCR2A6NFK2 248 aa9.33□□□□□ -0.92
CKS1B-201ENST00000308987 ZPR1O75312 459 aa9.31□□□□□ -0.92
CKS1B-201ENST00000308987 SWT1Q5T5J6 900 aaKnown RBP9.31□□□□□ -0.92
CKS1B-201ENST00000308987 CDHR5Q9HBB8 845 aa9.31□□□□□ -0.92
CKS1B-201ENST00000308987 SLC19A1P41440 591 aa9.3□□□□□ -0.92
CKS1B-201ENST00000308987 MYT1Q01538 1121 aa9.3□□□□□ -0.92
CKS1B-201ENST00000308987 NECTIN2Q92692 538 aa9.3□□□□□ -0.92
CKS1B-201ENST00000308987 POTECB2RU33 542 aa9.29□□□□□ -0.92
CKS1B-201ENST00000308987 SLF2Q8IX21 1173 aa9.29□□□□□ -0.92
CKS1B-201ENST00000308987 EMID1Q96A84 441 aaPredicted RBP9.29□□□□□ -0.92
CKS1B-201ENST00000308987 RBM27Q9P2N5 1060 aaKnown RBP9.29□□□□□ -0.92
CKS1B-201ENST00000308987 NCAPD3P42695 1498 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 85.9 ms