RNA–Protein interactions for RNA: ENST00000282516.12

NIPBL-201, Transcript of NIPBL, cohesin loading factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NIPBL, Length 10,435 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-201ENST00000282516 LRRFIP1Q32MZ4 808 aaKnown RBP10.74□□□□□ -0.69
NIPBL-201ENST00000282516 UTP3Q9NQZ2 479 aaKnown RBP eCLIP10.74□□□□□ -0.695e-7■■■■■ 47.4
NIPBL-201ENST00000282516 ARGLU1Q9NWB6 273 aaPredicted RBP10.74□□□□□ -0.69
NIPBL-201ENST00000282516 LMOD3Q0VAK6 560 aa10.73□□□□□ -0.69
NIPBL-201ENST00000282516 NOL8Q76FK4 1167 aaKnown RBP10.73□□□□□ -0.69
NIPBL-201ENST00000282516 RALBP1Q15311 655 aa10.73□□□□□ -0.69
NIPBL-201ENST00000282516 CCDC47Q96A33 483 aaKnown RBP10.73□□□□□ -0.69
NIPBL-201ENST00000282516 CWC15Q9P013 229 aaKnown RBP10.73□□□□□ -0.69
NIPBL-201ENST00000282516 KIF27Q86VH2 1401 aa10.73□□□□□ -0.69
NIPBL-201ENST00000282516 ABCF1Q8NE71 845 aaKnown RBP eCLIP10.73□□□□□ -0.69
NIPBL-201ENST00000282516 PHLDB1Q86UU1 1377 aa10.73□□□□□ -0.69
NIPBL-201ENST00000282516 MAP7D2Q96T17 732 aa10.73□□□□□ -0.69
NIPBL-201ENST00000282516 PCMTD1Q96MG8 357 aaPredicted RBP10.72□□□□□ -0.69
NIPBL-201ENST00000282516 ANO8Q9HCE9 1232 aaPredicted RBP10.72□□□□□ -0.69
NIPBL-201ENST00000282516 U2AF1L5P0DN76 240 aaPredicted RBP10.72□□□□□ -0.69
NIPBL-201ENST00000282516 U2AF1Q01081 240 aaKnown RBP eCLIP10.72□□□□□ -0.69
NIPBL-201ENST00000282516 PDZRN4Q6ZMN7 1036 aaPredicted RBP10.72□□□□□ -0.69
NIPBL-201ENST00000282516 HSP90B2PQ58FF3 399 aa10.72□□□□□ -0.69
NIPBL-201ENST00000282516 MYO6Q9UM54 1294 aa10.71□□□□□ -0.69
NIPBL-201ENST00000282516 ROCK2O75116 1388 aaKnown RBP10.71□□□□□ -0.69
NIPBL-201ENST00000282516 SMC4Q9NTJ3 1288 aa10.71□□□□□ -0.69
NIPBL-201ENST00000282516 FRAT2O75474 233 aaPredicted RBP10.71□□□□□ -0.69
NIPBL-201ENST00000282516 AMOTL1Q8IY63 956 aa10.71□□□□□ -0.69
NIPBL-201ENST00000282516 FAM184AQ8NB25 1140 aa10.71□□□□□ -0.7
NIPBL-201ENST00000282516 ZNF592Q92610 1267 aa10.71□□□□□ -0.7
NIPBL-201ENST00000282516 DCAF11Q8TEB1 546 aa10.71□□□□□ -0.7
NIPBL-201ENST00000282516 TRIM34Q9BYJ4 488 aa10.71□□□□□ -0.7
NIPBL-201ENST00000282516 CT47A1Q5JQC4 288 aaPredicted RBP10.7□□□□□ -0.7
NIPBL-201ENST00000282516 SYNE3Q6ZMZ3 975 aa10.7□□□□□ -0.7
NIPBL-201ENST00000282516 EIF4G1Q04637 1599 aaKnown RBP10.7□□□□□ -0.7
NIPBL-201ENST00000282516 HOMER1Q86YM7 354 aa10.7□□□□□ -0.7
NIPBL-201ENST00000282516 NOL10Q9BSC4 688 aaKnown RBP10.7□□□□□ -0.7
NIPBL-201ENST00000282516 ARHGAP35Q9NRY4 1499 aa10.69□□□□□ -0.7
NIPBL-201ENST00000282516 CCDC43Q96MW1 224 aaKnown RBP10.69□□□□□ -0.7
NIPBL-201ENST00000282516 CTDP1Q9Y5B0 961 aaPredicted RBP10.69□□□□□ -0.7
NIPBL-201ENST00000282516 MCTP1Q6DN14 999 aa10.69□□□□□ -0.7
NIPBL-201ENST00000282516 PAK3O75914 559 aaPredicted RBP10.69□□□□□ -0.7
NIPBL-201ENST00000282516 ZRSR2Q15696 482 aaKnown RBP10.69□□□□□ -0.7
NIPBL-201ENST00000282516 ODF2Q5BJF6 829 aa10.69□□□□□ -0.7
NIPBL-201ENST00000282516 VSIG10Q8N0Z9 540 aa10.69□□□□□ -0.7
NIPBL-201ENST00000282516 TRIM29Q14134 588 aa10.69□□□□□ -0.7
NIPBL-201ENST00000282516 FOXD4L1Q9NU39 408 aa10.68□□□□□ -0.7
NIPBL-201ENST00000282516 CENPJQ9HC77 1338 aaPredicted RBP10.68□□□□□ -0.7
NIPBL-201ENST00000282516 CCDC173Q0VFZ6 552 aa10.68□□□□□ -0.7
NIPBL-201ENST00000282516 CPLX2Q6PUV4 134 aaKnown RBP10.68□□□□□ -0.7
NIPBL-201ENST00000282516 FOXD4L5Q5VV16 416 aaPredicted RBP10.67□□□□□ -0.7
NIPBL-201ENST00000282516 FOXD4L4Q8WXT5 416 aaPredicted RBP10.67□□□□□ -0.7
NIPBL-201ENST00000282516 WWC1Q8IX03 1113 aa10.67□□□□□ -0.7
NIPBL-201ENST00000282516 GTF2E1P29083 439 aaPredicted RBP10.67□□□□□ -0.7
NIPBL-201ENST00000282516 H0YHG0 523 aa10.67□□□□□ -0.7
NIPBL-201ENST00000282516 SAFB2Q14151 953 aaKnown RBP eCLIP10.66□□□□□ -0.7
NIPBL-201ENST00000282516 KAT6BQ8WYB5 2073 aa10.66□□□□□ -0.7
NIPBL-201ENST00000282516 DDX49Q9Y6V7 483 aaKnown RBP10.66□□□□□ -0.7
NIPBL-201ENST00000282516 NAP1L1P55209 391 aaKnown RBP10.66□□□□□ -0.7
NIPBL-201ENST00000282516 ERCC6Q03468 1493 aa10.66□□□□□ -0.7
NIPBL-201ENST00000282516 MNS1Q8NEH6 495 aa10.66□□□□□ -0.7
NIPBL-201ENST00000282516 TIMELESSQ9UNS1 1208 aa10.66□□□□□ -0.7
NIPBL-201ENST00000282516 MTERF4Q7Z6M4 381 aaKnown RBP10.65□□□□□ -0.7
NIPBL-201ENST00000282516 DIAPH3Q9NSV4 1193 aa10.65□□□□□ -0.7
NIPBL-201ENST00000282516 TERF2IPQ9NYB0 399 aa10.65□□□□□ -0.7
NIPBL-201ENST00000282516 REC8O95072 547 aa10.65□□□□□ -0.71
NIPBL-201ENST00000282516 RUFY2Q8WXA3 655 aa10.65□□□□□ -0.71
NIPBL-201ENST00000282516 SLC4A10Q6U841 1118 aa10.64□□□□□ -0.71
NIPBL-201ENST00000282516 APPP05067 770 aa10.64□□□□□ -0.71
NIPBL-201ENST00000282516 EPS15P42566 896 aa10.64□□□□□ -0.71
NIPBL-201ENST00000282516 ERCC4Q92889 916 aaPredicted RBP10.64□□□□□ -0.71
NIPBL-201ENST00000282516 CAGE1Q8TC20 777 aa10.64□□□□□ -0.71
NIPBL-201ENST00000282516 CPLX1O14810 134 aa10.64□□□□□ -0.71
NIPBL-201ENST00000282516 NAT10Q9H0A0 1025 aaKnown RBP10.63□□□□□ -0.71
NIPBL-201ENST00000282516 CGNL1Q0VF96 1302 aa10.63□□□□□ -0.71
NIPBL-201ENST00000282516 HSP90AB2PQ58FF8 381 aa10.63□□□□□ -0.71
NIPBL-201ENST00000282516 PDE3BQ13370 1112 aa10.63□□□□□ -0.71
NIPBL-201ENST00000282516 RB1CC1Q8TDY2 1594 aa10.63□□□□□ -0.71
NIPBL-201ENST00000282516 CCDC66A2RUB6 948 aa10.62□□□□□ -0.71
NIPBL-201ENST00000282516 ZKSCAN1P17029 563 aaPredicted RBP10.62□□□□□ -0.71
NIPBL-201ENST00000282516 FAM13BQ9NYF5 915 aa10.62□□□□□ -0.71
NIPBL-201ENST00000282516 SETD5Q9C0A6 1442 aa10.62□□□□□ -0.71
NIPBL-201ENST00000282516 NEXNQ0ZGT2 675 aa10.61□□□□□ -0.71
NIPBL-201ENST00000282516 BAZ1BQ9UIG0 1483 aaKnown RBP10.61□□□□□ -0.71
NIPBL-201ENST00000282516 ROCK1Q13464 1354 aa10.61□□□□□ -0.71
NIPBL-201ENST00000282516 INCENPQ9NQS7 918 aa10.61□□□□□ -0.71
NIPBL-201ENST00000282516 IFT57Q9NWB7 429 aa10.61□□□□□ -0.71
NIPBL-201ENST00000282516 STK26Q9P289 416 aa10.61□□□□□ -0.71
NIPBL-201ENST00000282516 WRNQ14191 1432 aaPredicted RBP eCLIP10.61□□□□□ -0.71
NIPBL-201ENST00000282516 BICD2Q8TD16 824 aa10.61□□□□□ -0.71
NIPBL-201ENST00000282516 R3HCC1Q9Y3T6 440 aaKnown RBP10.61□□□□□ -0.71
NIPBL-201ENST00000282516 CCDC9Q9Y3X0 531 aaKnown RBP10.61□□□□□ -0.71
NIPBL-201ENST00000282516 TNIKQ9UKE5 1360 aa10.61□□□□□ -0.71
NIPBL-201ENST00000282516 CCP110O43303 1012 aa10.6□□□□□ -0.71
NIPBL-201ENST00000282516 GSE1Q14687 1217 aa10.6□□□□□ -0.71
NIPBL-201ENST00000282516 SIN3AQ96ST3 1273 aa10.6□□□□□ -0.71
NIPBL-201ENST00000282516 GOLGA6L7A0A1B0GV03 622 aa10.6□□□□□ -0.71
NIPBL-201ENST00000282516 CCDC73Q6ZRK6 1079 aa10.6□□□□□ -0.71
NIPBL-201ENST00000282516 RNF20Q5VTR2 975 aa10.59□□□□□ -0.71
NIPBL-201ENST00000282516 SAFBQ15424 915 aaKnown RBP eCLIP10.59□□□□□ -0.71
NIPBL-201ENST00000282516 CENPQQ7L2Z9 268 aaPredicted RBP10.59□□□□□ -0.71
NIPBL-201ENST00000282516 CWC22Q9HCG8 908 aaKnown RBP10.59□□□□□ -0.71
NIPBL-201ENST00000282516 DHX16O60231 1041 aaKnown RBP10.59□□□□□ -0.71
NIPBL-201ENST00000282516 OFD1O75665 1012 aa10.59□□□□□ -0.71
NIPBL-201ENST00000282516 RILPL2Q969X0 211 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms