RNA–Protein interactions for RNA: ENST00000233027.9

NEK4-201, Transcript of NIMA related kinase 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene NEK4, Length 6,057 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK4-201ENST00000233027 RAPGEF2Q9Y4G8 1499 aa16.68■□□□□ 0.26
NEK4-201ENST00000233027 CARMIL2Q6F5E8 1435 aa16.68■□□□□ 0.26
NEK4-201ENST00000233027 ST20-MTHFSA0A0A6YYL1 179 aa16.68■□□□□ 0.26
NEK4-201ENST00000233027 RRP1P56182 461 aaKnown RBP16.68■□□□□ 0.26
NEK4-201ENST00000233027 KIF3BO15066 747 aa16.67■□□□□ 0.26
NEK4-201ENST00000233027 HMMRO75330 724 aa16.67■□□□□ 0.26
NEK4-201ENST00000233027 GPATCH3Q96I76 525 aa16.67■□□□□ 0.26
NEK4-201ENST00000233027 FAM161AQ3B820 660 aa16.66■□□□□ 0.26
NEK4-201ENST00000233027 CENPQQ7L2Z9 268 aaPredicted RBP16.66■□□□□ 0.26
NEK4-201ENST00000233027 TPM4P67936 248 aa16.66■□□□□ 0.26
NEK4-201ENST00000233027 FOXD4L6Q3SYB3 417 aaPredicted RBP16.66■□□□□ 0.26
NEK4-201ENST00000233027 FOXD4L3Q6VB84 417 aaPredicted RBP16.66■□□□□ 0.26
NEK4-201ENST00000233027 GORABQ5T7V8 394 aa16.65■□□□□ 0.26
NEK4-201ENST00000233027 TERF2IPQ9NYB0 399 aa16.64■□□□□ 0.25
NEK4-201ENST00000233027 TRAK1Q9UPV9 953 aa16.64■□□□□ 0.25
NEK4-201ENST00000233027 ST18O60284 1047 aa16.64■□□□□ 0.25
NEK4-201ENST00000233027 ELL2O00472 640 aaPredicted RBP16.64■□□□□ 0.25
NEK4-201ENST00000233027 GSE1Q14687 1217 aa16.64■□□□□ 0.25
NEK4-201ENST00000233027 PRKRIP1Q9H875 184 aaPredicted RBP16.64■□□□□ 0.25
NEK4-201ENST00000233027 PHLDB1Q86UU1 1377 aa16.63■□□□□ 0.25
NEK4-201ENST00000233027 DDX11L8A8MPP1 907 aa16.63■□□□□ 0.25
NEK4-201ENST00000233027 CREBRFQ8IUR6 639 aa16.63■□□□□ 0.25
NEK4-201ENST00000233027 ANKRD45Q5TZF3 282 aa16.63■□□□□ 0.25
NEK4-201ENST00000233027 EFCAB2Q5VUJ9 269 aa16.62■□□□□ 0.25
NEK4-201ENST00000233027 NOC3LQ8WTT2 800 aaKnown RBP16.62■□□□□ 0.25
NEK4-201ENST00000233027 NUTM2FA1L443 756 aa16.62■□□□□ 0.25
NEK4-201ENST00000233027 CSPP1Q1MSJ5 1256 aa16.62■□□□□ 0.25
NEK4-201ENST00000233027 LTV1Q96GA3 475 aaPredicted RBP16.62■□□□□ 0.25
NEK4-201ENST00000233027 RILPL2Q969X0 211 aa16.61■□□□□ 0.25
NEK4-201ENST00000233027 COG6Q9Y2V7 657 aa16.61■□□□□ 0.25
NEK4-201ENST00000233027 ZBED9Q6R2W3 1325 aa16.61■□□□□ 0.25
NEK4-201ENST00000233027 TRHP20396 242 aaPredicted RBP16.6■□□□□ 0.25
NEK4-201ENST00000233027 TAF7LQ5H9L4 462 aa16.6■□□□□ 0.25
NEK4-201ENST00000233027 USP35Q9P2H5 1018 aa16.6■□□□□ 0.25
NEK4-201ENST00000233027 CCDC9Q9Y3X0 531 aaKnown RBP16.6■□□□□ 0.25
NEK4-201ENST00000233027 KIF16BQ96L93 1317 aa16.59■□□□□ 0.25
NEK4-201ENST00000233027 DDX49Q9Y6V7 483 aaKnown RBP16.59■□□□□ 0.25
NEK4-201ENST00000233027 RUSC2Q8N2Y8 1516 aa16.59■□□□□ 0.25
NEK4-201ENST00000233027 HSP90AA2PQ14568 343 aaPredicted RBP16.59■□□□□ 0.25
NEK4-201ENST00000233027 TOP2AP11388 1531 aaKnown RBP16.59■□□□□ 0.25
NEK4-201ENST00000233027 PHF14O94880 888 aa16.58■□□□□ 0.25
NEK4-201ENST00000233027 CCDC18Q5T9S5 1454 aa16.58■□□□□ 0.24
NEK4-201ENST00000233027 TNNT3P45378 269 aaPredicted RBP16.57■□□□□ 0.24
NEK4-201ENST00000233027 AMPHP49418 695 aa16.57■□□□□ 0.24
NEK4-201ENST00000233027 PDE4CQ08493 712 aa16.57■□□□□ 0.24
NEK4-201ENST00000233027 LMOD3Q0VAK6 560 aa16.57■□□□□ 0.24
NEK4-201ENST00000233027 USP47Q96K76 1375 aa16.56■□□□□ 0.24
NEK4-201ENST00000233027 SMARCA2P51531 1590 aa16.56■□□□□ 0.24
NEK4-201ENST00000233027 E9PSI1 815 aa16.55■□□□□ 0.24
NEK4-201ENST00000233027 ZKSCAN2Q63HK3 967 aa16.55■□□□□ 0.24
NEK4-201ENST00000233027 RASSF8Q8NHQ8 419 aa16.55■□□□□ 0.24
NEK4-201ENST00000233027 NGDNQ8NEJ9 315 aaKnown RBP16.55■□□□□ 0.24
NEK4-201ENST00000233027 FANCIQ9NVI1 1328 aa16.55■□□□□ 0.24
NEK4-201ENST00000233027 CCDC144AA2RUR9 1427 aa16.55■□□□□ 0.24
NEK4-201ENST00000233027 RSPH6AQ9H0K4 717 aa16.54■□□□□ 0.24
NEK4-201ENST00000233027 TOMM22Q9NS69 142 aa16.54■□□□□ 0.24
NEK4-201ENST00000233027 WASHC2CQ9Y4E1 1318 aa16.54■□□□□ 0.24
NEK4-201ENST00000233027 APAF1O14727 1248 aa16.54■□□□□ 0.24
NEK4-201ENST00000233027 SF3A1Q15459 793 aaKnown RBP16.53■□□□□ 0.24
NEK4-201ENST00000233027 H3BQV1 296 aa16.52■□□□□ 0.24
NEK4-201ENST00000233027 IFFO2Q5TF58 517 aa16.52■□□□□ 0.24
NEK4-201ENST00000233027 GOLGA6L1Q8N7Z2 621 aa16.52■□□□□ 0.24
NEK4-201ENST00000233027 SKOR2Q2VWA4 1001 aaPredicted RBP16.49■□□□□ 0.23
NEK4-201ENST00000233027 PDS5BQ9NTI5 1447 aa16.49■□□□□ 0.23
NEK4-201ENST00000233027 A0A0U1RQG5 324 aaPredicted RBP16.49■□□□□ 0.23
NEK4-201ENST00000233027 CCDC34Q96HJ3 373 aa16.48■□□□□ 0.23
NEK4-201ENST00000233027 CHMP4AQ9BY43 222 aa16.48■□□□□ 0.23
NEK4-201ENST00000233027 HDAC5Q9UQL6 1122 aa16.48■□□□□ 0.23
NEK4-201ENST00000233027 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.48■□□□□ 0.23
NEK4-201ENST00000233027 VSIG10Q8N0Z9 540 aa16.47■□□□□ 0.23
NEK4-201ENST00000233027 FAM184AQ8NB25 1140 aa16.47■□□□□ 0.23
NEK4-201ENST00000233027 CGNL1Q0VF96 1302 aa16.47■□□□□ 0.23
NEK4-201ENST00000233027 PES1O00541 588 aaKnown RBP16.47■□□□□ 0.23
NEK4-201ENST00000233027 NECTIN2Q92692 538 aa16.46■□□□□ 0.23
NEK4-201ENST00000233027 ZNF592Q92610 1267 aa16.46■□□□□ 0.22
NEK4-201ENST00000233027 GOLGA6L19H0YKK7 550 aa16.45■□□□□ 0.22
NEK4-201ENST00000233027 CCAR2Q8N163 923 aaKnown RBP16.45■□□□□ 0.22
NEK4-201ENST00000233027 TPM3P06753 285 aa16.45■□□□□ 0.22
NEK4-201ENST00000233027 MCTP1Q6DN14 999 aa16.45■□□□□ 0.22
NEK4-201ENST00000233027 ANO8Q9HCE9 1232 aaPredicted RBP16.44■□□□□ 0.22
NEK4-201ENST00000233027 COG3Q96JB2 828 aa16.43■□□□□ 0.22
NEK4-201ENST00000233027 MINK1Q8N4C8 1332 aaPredicted RBP16.43■□□□□ 0.22
NEK4-201ENST00000233027 RSPH4AQ5TD94 716 aa16.43■□□□□ 0.22
NEK4-201ENST00000233027 KIF3AQ9Y496 699 aa16.43■□□□□ 0.22
NEK4-201ENST00000233027 BECN2A8MW95 431 aa16.43■□□□□ 0.22
NEK4-201ENST00000233027 TPD52L1Q16890 204 aaPredicted RBP16.43■□□□□ 0.22
NEK4-201ENST00000233027 NGEFQ8N5V2 710 aa16.42■□□□□ 0.22
NEK4-201ENST00000233027 EIF2S2P20042 333 aaKnown RBP16.42■□□□□ 0.22
NEK4-201ENST00000233027 DZIP1LQ8IYY4 767 aaKnown RBP16.42■□□□□ 0.22
NEK4-201ENST00000233027 DIAPH3Q9NSV4 1193 aa16.42■□□□□ 0.22
NEK4-201ENST00000233027 DDX19BQ9UMR2 479 aa16.42■□□□□ 0.22
NEK4-201ENST00000233027 EID1Q9Y6B2 187 aa16.42■□□□□ 0.22
NEK4-201ENST00000233027 ANO2Q9NQ90 1003 aa16.42■□□□□ 0.22
NEK4-201ENST00000233027 FRAT2O75474 233 aaPredicted RBP16.42■□□□□ 0.22
NEK4-201ENST00000233027 EVC2Q86UK5 1308 aa16.42■□□□□ 0.22
NEK4-201ENST00000233027 RIPK4P57078 832 aa16.41■□□□□ 0.22
NEK4-201ENST00000233027 ATP6V1DQ9Y5K8 247 aa16.41■□□□□ 0.22
NEK4-201ENST00000233027 CHMP5Q9NZZ3 219 aa16.4■□□□□ 0.22
NEK4-201ENST00000233027 KIF7Q2M1P5 1343 aa16.4■□□□□ 0.22
NEK4-201ENST00000233027 VPS53Q5VIR6 699 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms