RNA–Protein interactions for RNA: YLR229C

CDC42, Transcript of Small rho-like GTPase, yeast

Gene CDC42, Length 576 nt, Biotype protein coding, Subcellular localisation Cellular bud, Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC42	YLR229C	YGR015C	P53208	328 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	GOR1	P53839	350 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	MPS1	P54199	764 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	YAT1	P80235	687 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	MRPS16	Q02608	121 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	MET31	Q03081	177 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	RQC1	Q05468	723 aa	Known RBP	4.14	□□□□□ -1.75
CDC42	YLR229C	YLR345W	Q06137	509 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	VPS74	Q06385	345 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	ARO10	Q06408	635 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	YDR056C	Q12025	205 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	YDL109C	Q12103	647 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	RRP42	Q12277	265 aa	Predicted RBP	4.14	□□□□□ -1.75
CDC42	YLR229C	SFM1	Q12314	213 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	PDH1	Q12428	516 aa	Known RBP	4.14	□□□□□ -1.75
CDC42	YLR229C	AHC1	Q12433	566 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	RTN2	Q12443	393 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	MHT1	Q12525	324 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	YCL012C	Q8J0M4	134 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	YBR298C-A	Q8TGK4	73 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	YHR213W-A	Q8TGT4	77 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	SRN2	Q99176	213 aa		4.14	□□□□□ -1.75
CDC42	YLR229C	TIM9	O74700	87 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	ALG7	P07286	448 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	TFS1	P14306	219 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	HXT2	P23585	541 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	RRP7	P25368	297 aa	Predicted RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	RHB1	P25378	209 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	RFA2	P26754	273 aa	Known RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	ATP11	P32453	318 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	DAL3	P32459	195 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	PET309	P32522	965 aa	Predicted RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	ECM25	P32525	599 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	MSS1	P32559	526 aa	Predicted RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	JEN1	P36035	616 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	SDS22	P36047	338 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	RSM22	P36056	628 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	GMH1	P36125	273 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	IML3	P38265	245 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	COS8	P38723	381 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	BIG1	P38813	335 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	LSM5	P40089	93 aa	Known RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	COG3	P40094	801 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	ATG18	P43601	500 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	HMS2	P47175	358 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	YJR149W	P47177	404 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	RPS12	P48589	143 aa	Known RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	MDM34	P53083	459 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	COG7	P53195	279 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	COS1	P53822	381 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	YNL181W	P53878	407 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	LSM7	P53905	115 aa	Known RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	FYV6	P53913	173 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	SCS7	Q03529	384 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	ARX1	Q03862	593 aa	Known RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	YMR130W	Q04223	302 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	PDR8	Q06149	701 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	YLR446W	Q06204	433 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	DXO1	Q06349	442 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	GPN3	Q06543	272 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	SYC1	Q08553	188 aa	Predicted RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	PEX27	Q08580	376 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	YPL245W	Q12179	454 aa	Known RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	RPN5	Q12250	445 aa	Known RBP	4.13	□□□□□ -1.75
CDC42	YLR229C	YPR011C	Q12251	326 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	POM34	Q12445	299 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	LAS17	Q12446	633 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	MTR10	Q99189	972 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	Q0010	Q9ZZX9	128 aa		4.13	□□□□□ -1.75
CDC42	YLR229C	YBR085C-A	O43137	85 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	URA3	P03962	267 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	FUM1	P08417	488 aa	Known RBP	4.12	□□□□□ -1.75
CDC42	YLR229C	MSF1	P08425	469 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	DAP2	P18962	818 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	BUD5	P25300	642 aa	Predicted RBP	4.12	□□□□□ -1.75
CDC42	YLR229C	ERG9	P29704	444 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	YPT7	P32939	208 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	PMT1	P33775	817 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	SOL2	P37262	315 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	COS111	P38308	924 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	MED6	P38782	295 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	YHR127W	P38833	243 aa	Known RBP	4.12	□□□□□ -1.75
CDC42	YLR229C	MDM31	P38880	579 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	NVJ1	P38881	321 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.12	□□□□□ -1.75	not detected
CDC42	YLR229C	ERV46	P39727	415 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	PTI1	P39927	425 aa	Predicted RBP	4.12	□□□□□ -1.75
CDC42	YLR229C	RRG9	P40156	214 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	YNL195C	P40168	261 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	PIG2	P40187	538 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	OSW5	P40219	148 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	YJL163C	P46996	555 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	AIM22	P47051	409 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	MDE1	P47095	244 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	YJR030C	P47101	745 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	YAE1	P47118	141 aa	Predicted RBP	4.12	□□□□□ -1.75
CDC42	YLR229C	NBP35	P52920	328 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	MRH4	P53166	561 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	MKC7	P53379	596 aa		4.12	□□□□□ -1.75
CDC42	YLR229C	RRN9	P53437	365 aa		4.12	□□□□□ -1.75

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