RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 TOB2Q14106 344 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-211ENST00000597968 TARBP2Q15633 366 aaKnown RBP15.34■□□□□ 0.05
TRIM28-211ENST00000597968 HERC4Q5GLZ8 1057 aaPredicted RBP15.34■□□□□ 0.05
TRIM28-211ENST00000597968 SPOUT1Q5T280 376 aaKnown RBP15.34■□□□□ 0.05
TRIM28-211ENST00000597968 TMEM184AQ6ZMB5 413 aa15.34■□□□□ 0.05
TRIM28-211ENST00000597968 BLIDQ8IZY5 108 aa15.34■□□□□ 0.05
TRIM28-211ENST00000597968 LRRC43Q8N309 656 aa15.34■□□□□ 0.05
TRIM28-211ENST00000597968 NAP1L4Q99733 375 aaKnown RBP15.34■□□□□ 0.05
TRIM28-211ENST00000597968 IGFLR1Q9H665 355 aa15.34■□□□□ 0.05
TRIM28-211ENST00000597968 TYW1Q9NV66 732 aaKnown RBP15.34■□□□□ 0.05
TRIM28-211ENST00000597968 IGKV6-21A0A0C4DH24 114 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 ADAMTS3O15072 1205 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 SKIP12755 728 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 DARSP14868 501 aaKnown RBP15.33■□□□□ 0.04
TRIM28-211ENST00000597968 ATF7P17544 494 aaPredicted RBP15.33■□□□□ 0.04
TRIM28-211ENST00000597968 XBP1P17861 261 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 CLCN3P51790 818 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 CCT2P78371 535 aaKnown RBP15.33■□□□□ 0.04
TRIM28-211ENST00000597968 FAM102BQ5T8I3 360 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 KRT25Q7Z3Z0 450 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 ZNF410Q86VK4 478 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 THNSL1Q8IYQ7 743 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 ABI1Q8IZP0 508 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 COLGALT1Q8NBJ5 622 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 MICAL1Q8TDZ2 1067 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 MRPS27Q92552 414 aaKnown RBP15.33■□□□□ 0.04
TRIM28-211ENST00000597968 MRPL9Q9BYD2 267 aaKnown RBP15.33■□□□□ 0.04
TRIM28-211ENST00000597968 CWH43Q9H720 699 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 TLE6Q9H808 572 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 CLEC1BQ9P126 229 aa15.33■□□□□ 0.04
TRIM28-211ENST00000597968 FSCN2O14926 492 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 GCFC2P16383 781 aaKnown RBP15.32■□□□□ 0.04
TRIM28-211ENST00000597968 IRS1P35568 1242 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 NRIP1P48552 1158 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 KRT17Q04695 432 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 NONOQ15233 471 aaKnown RBP eCLIP15.32■□□□□ 0.04
TRIM28-211ENST00000597968 PPP4R3AQ6IN85 833 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 MIER3Q7Z3K6 550 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 ECHDC2Q86YB7 292 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 FAM20AQ96MK3 541 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 CASD1Q96PB1 797 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 GCOM2Q9BZD3 368 aaPredicted RBP15.32■□□□□ 0.04
TRIM28-211ENST00000597968 UNC45AQ9H3U1 944 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 NCOA5Q9HCD5 579 aaKnown RBP15.32■□□□□ 0.04
TRIM28-211ENST00000597968 RAPGEFL1Q9UHV5 662 aa15.32■□□□□ 0.04
TRIM28-211ENST00000597968 MYH9P35579 1960 aaKnown RBP15.32■□□□□ 0.04
TRIM28-211ENST00000597968 C5orf42Q9H799 3197 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 TBX3O15119 743 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 EIF5BO60841 1220 aaKnown RBP15.31■□□□□ 0.04
TRIM28-211ENST00000597968 MAFO75444 373 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-211ENST00000597968 HOXB8P17481 243 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-211ENST00000597968 SFPQP23246 707 aaKnown RBP eCLIP15.31■□□□□ 0.04
TRIM28-211ENST00000597968 HOXD11P31277 338 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-211ENST00000597968 GTF2F1P35269 517 aaKnown RBP eCLIP15.31■□□□□ 0.043e-6■□□□□ 10.1
TRIM28-211ENST00000597968 GATMP50440 423 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 BMS1Q14692 1282 aaKnown RBP15.31■□□□□ 0.04
TRIM28-211ENST00000597968 CBX2Q14781 532 aaPredicted RBP15.31■□□□□ 0.04
TRIM28-211ENST00000597968 DUSP6Q16828 381 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 ADGRD2Q7Z7M1 963 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 LRRC71Q8N4P6 559 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 ETNPPLQ8TBG4 499 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 ZNF558Q96NG5 402 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 STK39Q9UEW8 545 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 STK36Q9NRP7 1315 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 LOXHD1Q8IVV2 1947 aa15.31■□□□□ 0.04
TRIM28-211ENST00000597968 LINC01565O15544 149 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 CHMP2AO43633 222 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 PPFIA3O75145 1194 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 RAB27AP51159 221 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 PSMC5P62195 406 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 PPP2R5CQ13362 524 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 KCNC3Q14003 757 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 ATG2AQ2TAZ0 1938 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 FNDC1Q4ZHG4 1894 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-211ENST00000597968 KCNT2Q6UVM3 1135 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 TRMT1LQ7Z2T5 733 aaKnown RBP15.3■□□□□ 0.04
TRIM28-211ENST00000597968 BMP8AQ7Z5Y6 402 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 ZNF598Q86UK7 904 aaKnown RBP15.3■□□□□ 0.04
TRIM28-211ENST00000597968 NLRP7Q8WX94 980 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 SCLT1Q96NL6 688 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 CEP89Q96ST8 783 aa15.3■□□□□ 0.04
TRIM28-211ENST00000597968 PHF7Q9BWX1 381 aaPredicted RBP15.3■□□□□ 0.04
TRIM28-211ENST00000597968 DDX25Q9UHL0 483 aaKnown RBP15.3■□□□□ 0.04
TRIM28-211ENST00000597968 KIAA1671Q9BY89 1806 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 FAM86C2PA6NEL3 165 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 LOC730098B7Z3J9 87 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 GAS2O43903 313 aaKnown RBP15.29■□□□□ 0.04
TRIM28-211ENST00000597968 GLP2RO95838 553 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 FGFR1P11362 822 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 ANAPC15P60006 121 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 GIT2Q14161 759 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 ANKRD1Q15327 319 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 PCBP1Q15365 356 aaKnown RBP eCLIP15.29■□□□□ 0.04
TRIM28-211ENST00000597968 NPY5RQ15761 445 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 UGCGQ16739 394 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 RNF135Q8IUD6 432 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 SUSD6Q92537 303 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 MFSD14AQ96MC6 490 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 UIMC1Q96RL1 719 aa15.29■□□□□ 0.04
TRIM28-211ENST00000597968 PPP1R16BQ96T49 567 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms