RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 POLR3CQ9BUI4 534 aaPredicted RBP28.86■■■□□ 2.21
TRIM28-204ENST00000594806 TUFT1Q9NNX1 390 aa28.86■■■□□ 2.21
TRIM28-204ENST00000594806 XRCC6P12956 609 aaKnown RBP eCLIP28.85■■■□□ 2.213e-9■□□□□ 11
TRIM28-204ENST00000594806 EPHB4P54760 987 aa28.85■■■□□ 2.21
TRIM28-204ENST00000594806 TMEM240Q5SV17 173 aa28.85■■■□□ 2.21
TRIM28-204ENST00000594806 HAUS3Q68CZ6 603 aa28.85■■■□□ 2.21
TRIM28-204ENST00000594806 TPH2Q8IWU9 490 aa28.85■■■□□ 2.21
TRIM28-204ENST00000594806 IGSF22Q8N9C0 903 aa28.85■■■□□ 2.21
TRIM28-204ENST00000594806 JPH2Q9BR39 696 aaPredicted RBP28.85■■■□□ 2.21
TRIM28-204ENST00000594806 MTIF3Q9H2K0 278 aaKnown RBP28.85■■■□□ 2.21
TRIM28-204ENST00000594806 FGBP02675 491 aa28.84■■■□□ 2.21
TRIM28-204ENST00000594806 CXCL10P02778 98 aa28.84■■■□□ 2.21
TRIM28-204ENST00000594806 TMOD1P28289 359 aa28.84■■■□□ 2.21
TRIM28-204ENST00000594806 CYP4A11Q02928 519 aa28.84■■■□□ 2.21
TRIM28-204ENST00000594806 TBC1D8BQ0IIM8 1120 aa28.84■■■□□ 2.21
TRIM28-204ENST00000594806 CTTNQ14247 550 aaKnown RBP28.84■■■□□ 2.21
TRIM28-204ENST00000594806 ANO5Q75V66 913 aa28.84■■■□□ 2.21
TRIM28-204ENST00000594806 C16orf59Q7L2K0 433 aa28.84■■■□□ 2.21
TRIM28-204ENST00000594806 LRWD1Q9UFC0 647 aa28.84■■■□□ 2.21
TRIM28-204ENST00000594806 M0QZ92 97 aa28.83■■■□□ 2.21
TRIM28-204ENST00000594806 ACTN1P12814 892 aa28.83■■■□□ 2.21
TRIM28-204ENST00000594806 RPA1P27694 616 aa28.83■■■□□ 2.21
TRIM28-204ENST00000594806 YWHABP31946 246 aaKnown RBP28.83■■■□□ 2.21
TRIM28-204ENST00000594806 SHHQ15465 462 aa28.83■■■□□ 2.21
TRIM28-204ENST00000594806 ZNF365Q70YC5 407 aa28.83■■■□□ 2.21
TRIM28-204ENST00000594806 BUD13Q9BRD0 619 aaKnown RBP eCLIP28.83■■■□□ 2.213e-9■□□□□ 11.3
TRIM28-204ENST00000594806 FAM49AQ9H0Q0 323 aaPredicted RBP28.83■■■□□ 2.21
TRIM28-204ENST00000594806 CYP26B1Q9NR63 512 aa28.83■■■□□ 2.21
TRIM28-204ENST00000594806 WRAP73Q9P2S5 460 aaPredicted RBP28.83■■■□□ 2.21
TRIM28-204ENST00000594806 ACRP10323 421 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 MRPS6P82932 125 aaKnown RBP28.82■■■□□ 2.2
TRIM28-204ENST00000594806 MTERF2Q49AM1 385 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 DEFB128Q7Z7B8 93 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 KIAA0319LQ8IZA0 1049 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 SPRYD3Q8NCJ5 442 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 HERVK_113Q902F9 699 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 CEP89Q96ST8 783 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 ANKEF1Q9NU02 776 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 SQORQ9Y6N5 450 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 TET1Q8NFU7 2136 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 TRIOBPQ9H2D6 2365 aa28.82■■■□□ 2.2
TRIM28-204ENST00000594806 KDM3AQ9Y4C1 1321 aa28.81■■■□□ 2.2
TRIM28-204ENST00000594806 SPATA31C1P0DKV0 1188 aa28.81■■■□□ 2.2
TRIM28-204ENST00000594806 GPNMBQ14956 572 aa28.81■■■□□ 2.2
TRIM28-204ENST00000594806 SF3A1Q15459 793 aaKnown RBP28.81■■■□□ 2.2
TRIM28-204ENST00000594806 EFCAB12Q6NXP0 572 aa28.81■■■□□ 2.2
TRIM28-204ENST00000594806 FAM43BQ6ZT52 329 aaPredicted RBP28.81■■■□□ 2.2
TRIM28-204ENST00000594806 CATSPER3Q86XQ3 398 aa28.81■■■□□ 2.2
TRIM28-204ENST00000594806 METTL13Q8N6R0 699 aa28.81■■■□□ 2.2
TRIM28-204ENST00000594806 VWCEQ96DN2 955 aa28.81■■■□□ 2.2
TRIM28-204ENST00000594806 FTOQ9C0B1 505 aaKnown RBP eCLIP28.81■■■□□ 2.24e-6■■□□□ 13.7
TRIM28-204ENST00000594806 NBNO60934 754 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 MAFO75444 373 aaPredicted RBP28.8■■■□□ 2.2
TRIM28-204ENST00000594806 CHRNA1P02708 482 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 CTSHP09668 335 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 ZSCAN22P10073 491 aaPredicted RBP28.8■■■□□ 2.2
TRIM28-204ENST00000594806 RFC5P40937 340 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 CDC42EP1Q00587 391 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 MGAT3Q09327 533 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 LRIT3Q3SXY7 679 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 HABP4Q5JVS0 413 aaKnown RBP28.8■■■□□ 2.2
TRIM28-204ENST00000594806 C9orf50Q5SZB4 431 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 LINC01465Q8N7H1 131 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 ZBTB10Q96DT7 871 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 CEP170P1Q96L14 293 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 RNPC3Q96LT9 517 aaKnown RBP28.8■■■□□ 2.2
TRIM28-204ENST00000594806 MAP7D2Q96T17 732 aa28.8■■■□□ 2.2
TRIM28-204ENST00000594806 IGKV6-21A0A0C4DH24 114 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 DNM2P50570 870 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 MBTPS1Q14703 1052 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 KRT79Q5XKE5 535 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 CNKSR3Q6P9H4 555 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 USP38Q8NB14 1042 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 AK8Q96MA6 479 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 NACC1Q96RE7 527 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 TRPV2Q9Y5S1 764 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 CDY2AQ9Y6F7 541 aa28.79■■■□□ 2.2
TRIM28-204ENST00000594806 MORC2Q9Y6X9 1032 aaPredicted RBP28.79■■■□□ 2.2
TRIM28-204ENST00000594806 GAS2O43903 313 aaKnown RBP28.78■■■□□ 2.2
TRIM28-204ENST00000594806 EFCAB14O75071 495 aa28.78■■■□□ 2.2
TRIM28-204ENST00000594806 BAIAP3O94812 1187 aa28.78■■■□□ 2.2
TRIM28-204ENST00000594806 IL17AQ16552 155 aa28.78■■■□□ 2.2
TRIM28-204ENST00000594806 XKR9Q5GH70 373 aa28.78■■■□□ 2.2
TRIM28-204ENST00000594806 RASIP1Q5U651 963 aa28.78■■■□□ 2.2
TRIM28-204ENST00000594806 KCTD17Q8N5Z5 321 aa28.78■■■□□ 2.2
TRIM28-204ENST00000594806 SLC7A3Q8WY07 619 aa28.78■■■□□ 2.2
TRIM28-204ENST00000594806 CELF4Q9BZC1 486 aaKnown RBP28.78■■■□□ 2.2
TRIM28-204ENST00000594806 TMEM150BA6NC51 233 aa28.77■■■□□ 2.2
TRIM28-204ENST00000594806 MED24O75448 989 aa28.77■■■□□ 2.2
TRIM28-204ENST00000594806 CCT6AP40227 531 aaKnown RBP28.77■■■□□ 2.2
TRIM28-204ENST00000594806 PLA2G4FQ68DD2 849 aa28.77■■■□□ 2.2
TRIM28-204ENST00000594806 APBB2Q92870 758 aa28.77■■■□□ 2.2
TRIM28-204ENST00000594806 CCDC43Q96MW1 224 aaKnown RBP28.77■■■□□ 2.2
TRIM28-204ENST00000594806 ZNF396Q96N95 335 aaPredicted RBP28.77■■■□□ 2.2
TRIM28-204ENST00000594806 DHX33Q9H6R0 707 aaKnown RBP28.77■■■□□ 2.2
TRIM28-204ENST00000594806 SUGCTQ9HAC7 445 aa28.77■■■□□ 2.2
TRIM28-204ENST00000594806 MYH15Q9Y2K3 1946 aa28.77■■■□□ 2.2
TRIM28-204ENST00000594806 VWA3AA6NCI4 1184 aa28.76■■■□□ 2.19
TRIM28-204ENST00000594806 SLC26A4O43511 780 aa28.76■■■□□ 2.19
TRIM28-204ENST00000594806 F13A1P00488 732 aa28.76■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms