RNA–Protein interactions for RNA: ENST00000459947.5

UBR4-208, Transcript of ubiquitin protein ligase E3 component n-recognin 4, human

TSL 2

Gene UBR4, Length 3,873 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
UBR4-208	ENST00000459947	TREH	O43280	583 aa		11.96	□□□□□ -0.5
UBR4-208	ENST00000459947	KLRC1	P26715	233 aa		11.96	□□□□□ -0.5
UBR4-208	ENST00000459947	PCBP1	Q15365	356 aa	Known RBP eCLIP	11.96	□□□□□ -0.5	4e-20	■□□□□ 8.2
UBR4-208	ENST00000459947	TARBP2	Q15633	366 aa	Known RBP	11.96	□□□□□ -0.5
UBR4-208	ENST00000459947	IGSF22	Q8N9C0	903 aa		11.96	□□□□□ -0.5
UBR4-208	ENST00000459947	MCPH1	Q8NEM0	835 aa		11.96	□□□□□ -0.5
UBR4-208	ENST00000459947	HERVK_113	Q902F9	699 aa		11.96	□□□□□ -0.5
UBR4-208	ENST00000459947	HSD17B14	Q9BPX1	270 aa		11.96	□□□□□ -0.5
UBR4-208	ENST00000459947	PYM1	Q9BRP8	204 aa	Known RBP	11.96	□□□□□ -0.5
UBR4-208	ENST00000459947	WDR81	Q562E7	1941 aa		11.96	□□□□□ -0.5
UBR4-208	ENST00000459947	DGAT1	O75907	488 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	C22orf31	O95567	290 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	F13A1	P00488	732 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	CYP2C18	P33260	490 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	CCT6A	P40227	531 aa	Known RBP	11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	IGBP1	P78318	339 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	ZNF410	Q86VK4	478 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	CALML4	Q96GE6	196 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	CIZ1	Q9ULV3	898 aa	Predicted RBP	11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	EML1	O00423	815 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	MAF	O75444	373 aa	Predicted RBP	11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	YWHAB	P31946	246 aa	Known RBP	11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	RSPH1	Q8WYR4	309 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	DHX38	Q92620	1227 aa	Known RBP	11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	FTHL17	Q9BXU8	183 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	CYP26B1	Q9NR63	512 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	CCDC39	Q9UFE4	941 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	TEC	P42680	631 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	TFDP1	Q14186	410 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	TPH2	Q8IWU9	490 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	BANK1	Q8NDB2	785 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	PHOSPHO2	Q8TCD6	241 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	CEP170P1	Q96L14	293 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	SLC9A7	Q96T83	725 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	PRO3102	Q9H379	93 aa		11.95	□□□□□ -0.5
UBR4-208	ENST00000459947	ZNF862	O60290	1169 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	SCP2	P22307	547 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	POLG	P54098	1239 aa	Predicted RBP	11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	STK38	Q15208	465 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	XKR9	Q5GH70	373 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	CHRDL2	Q6WN34	429 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	SNX29	Q8TEQ0	813 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	ATP6V0A4	Q9HBG4	840 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	ATP4A	P20648	1035 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	NASP	P49321	788 aa	Predicted RBP	11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	MDM2	Q00987	491 aa	Predicted RBP	11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	MTERF2	Q49AM1	385 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	HYI	Q5T013	277 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	FTO	Q9C0B1	505 aa	Known RBP eCLIP	11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	WNT8A	Q9H1J5	351 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	KCND2	Q9NZV8	630 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	TMEM265	A0A087WTH1	108 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	KCNJ6	P48051	423 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	KCNG4	Q8TDN1	519 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	CELF4	Q9BZC1	486 aa	Known RBP	11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	FOXD4L1	Q9NU39	408 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	MYH15	Q9Y2K3	1946 aa		11.94	□□□□□ -0.5
UBR4-208	ENST00000459947	IGKV6-21	A0A0C4DH24	114 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	ARHGEF35	A5YM69	484 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	DTNB	O60941	627 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	PPP6R2	O75170	966 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	SLITRK3	O94933	977 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	UBA7	P41226	1012 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	CRYBB1	P53674	252 aa	Predicted RBP	11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	POU5F1B	Q06416	359 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	IKBKE	Q14164	716 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	MXD4	Q14582	209 aa	Predicted RBP	11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	SF3A1	Q15459	793 aa	Known RBP	11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	MARCH8	Q5T0T0	291 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	ZNF618	Q5T7W0	954 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	GPR153	Q6NV75	609 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	TSHZ1	Q6ZSZ6	1077 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	FERMT3	Q86UX7	667 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	RNPC3	Q96LT9	517 aa	Known RBP	11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	DNM3	Q9UQ16	869 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	PPP2R5A	Q15172	486 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	RAB30	Q15771	203 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	UGCG	Q16739	394 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	LRIT3	Q3SXY7	679 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	LINC01465	Q8N7H1	131 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	PSPC1	Q8WXF1	523 aa	Known RBP	11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	CTAGE1	Q96RT6	745 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	MTR	Q99707	1265 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	STBD1	O95210	358 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	ABCD1	P33897	745 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	CCL23	P55773	120 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	MGAT3	Q09327	533 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	SLC39A14	Q15043	492 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	EFCAB12	Q6NXP0	572 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	GCOM2	Q9BZD3	368 aa	Predicted RBP	11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	DHX33	Q9H6R0	707 aa	Known RBP	11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	TELO2	Q9Y4R8	837 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	SRPRB	Q9Y5M8	271 aa	Known RBP	11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	CDY2A	Q9Y6F7	541 aa		11.93	□□□□□ -0.5
UBR4-208	ENST00000459947	POTEM	A6NI47	508 aa		11.92	□□□□□ -0.5
UBR4-208	ENST00000459947	GPR182	O15218	404 aa		11.92	□□□□□ -0.5
UBR4-208	ENST00000459947	EYA4	O95677	639 aa		11.92	□□□□□ -0.5
UBR4-208	ENST00000459947	CSF2RA	P15509	400 aa		11.92	□□□□□ -0.5
UBR4-208	ENST00000459947	METTL13	Q8N6R0	699 aa		11.92	□□□□□ -0.5
UBR4-208	ENST00000459947	KRI1	Q8N9T8	703 aa	Known RBP	11.92	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms