RNA–Protein interactions for RNA: YDR364C

CDC40, Transcript of Pre-mRNA splicing factor, yeast

Gene CDC40, Length 1,368 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC40	YDR364C	ADE13	Q05911	482 aa	Known RBP	3.18	□□□□□ -1.9
CDC40	YDR364C	GRX8	Q05926	109 aa		3.18	□□□□□ -1.9
CDC40	YDR364C	COS7	Q07788	383 aa		3.18	□□□□□ -1.9
CDC40	YDR364C	NRT1	Q08485	598 aa		3.18	□□□□□ -1.9
CDC40	YDR364C	YLR049C	Q12110	428 aa		3.18	□□□□□ -1.9
CDC40	YDR364C	Q0010	Q9ZZX9	128 aa		3.18	□□□□□ -1.9
CDC40	YDR364C	ECM29	P38737	1868 aa		3.18	□□□□□ -1.9
CDC40	YDR364C	ARG81	P05085	880 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	SPS4	P09937	338 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	GPA2	P10823	449 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	DAP2	P18962	818 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	PMA2	P19657	947 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	YCL068C	P25593	260 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	DAL80	P26343	269 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	RAD14	P28519	371 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	DEP1	P31385	405 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	SUR1	P33300	382 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	ETR1	P38071	380 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	TSC10	P38342	320 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	LIN1	P38852	340 aa	Predicted RBP	3.17	□□□□□ -1.9
CDC40	YDR364C	YAT2	P40017	923 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	MMF1	P40185	145 aa	Known RBP	3.17	□□□□□ -1.9
CDC40	YDR364C	BTT1	P40314	149 aa	Predicted RBP	3.17	□□□□□ -1.9
CDC40	YDR364C	CHS6	P40955	746 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	UFE1	P41834	346 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	RTT101	P47050	842 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	TRF5	P48561	642 aa	Known RBP	3.17	□□□□□ -1.9
CDC40	YDR364C	PRP24	P49960	444 aa	Known RBP	3.17	□□□□□ -1.9
CDC40	YDR364C	SHE4	P51534	789 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	TIM13	P53299	105 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	BIO4	P53630	237 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	PDR16	P53860	351 aa	Known RBP	3.17	□□□□□ -1.9
CDC40	YDR364C	YNL058C	P53947	316 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	SLT2	Q00772	484 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	PIR3	Q03180	325 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	ENT5	Q03769	411 aa	Known RBP	3.17	□□□□□ -1.9
CDC40	YDR364C	YLR053C	Q12026	108 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	LDB17	Q12342	491 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	AHC1	Q12433	566 aa		3.17	□□□□□ -1.9
CDC40	YDR364C	MRP2	P10663	115 aa	Predicted RBP	3.16	□□□□□ -1.9
CDC40	YDR364C	MTF1	P14908	341 aa	Known RBP	3.16	□□□□□ -1.9
CDC40	YDR364C	CDC10	P25342	322 aa	Known RBP	3.16	□□□□□ -1.9
CDC40	YDR364C	GID7	P25569	745 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	CYM1	P32898	989 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	PPQ1	P32945	549 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	PHM8	P40025	321 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	SNO3	P43544	222 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	YFL015C	P43578	164 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	YFL012W	P43580	148 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	SNG1	P46950	547 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	LIA1	P47120	325 aa	Known RBP	3.16	□□□□□ -1.9
CDC40	YDR364C	ERG26	P53199	349 aa	Known RBP	3.16	□□□□□ -1.9
CDC40	YDR364C	RSM23	Q01163	450 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	TOF2	Q02208	771 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	YVH1	Q02256	364 aa	Known RBP	3.16	□□□□□ -1.9
CDC40	YDR364C	RLI1	Q03195	608 aa	Known RBP	3.16	□□□□□ -1.9
CDC40	YDR364C	INP2	Q03824	705 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	RPN9	Q04062	393 aa	Known RBP	3.16	□□□□□ -1.9
CDC40	YDR364C	DCS1	Q06151	350 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	SWC7	Q06707	132 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	YET3	Q07451	203 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	MED2	Q12124	431 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	UBX3	Q12229	455 aa		3.16	□□□□□ -1.9
CDC40	YDR364C	PFK27	Q12471	397 aa	Predicted RBP	3.16	□□□□□ -1.9
CDC40	YDR364C	COX5A	P00424	153 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	TAL1	P15019	335 aa	Known RBP	3.15	□□□□□ -1.9
CDC40	YDR364C	SNT1	P25357	1226 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	PHO91	P27514	894 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	SGE1	P33335	543 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	MRPL4	P36517	319 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	YBR032W	P38223	100 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	ZTA1	P38230	334 aa	Known RBP	3.15	□□□□□ -1.9
CDC40	YDR364C	YBR062C	P38239	180 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	ATG12	P38316	186 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	YHR218W	P38899	603 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	ASN2	P49090	572 aa	Known RBP	3.15	□□□□□ -1.9
CDC40	YDR364C	YGL108C	P53139	140 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	YGR126W	P53274	230 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	RCF2	P53721	224 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	TRM112	P53738	135 aa	Predicted RBP	3.15	□□□□□ -1.9
CDC40	YDR364C	DUG3	P53871	357 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	YMR102C	Q03177	834 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	YMR178W	Q03219	274 aa	Known RBP	3.15	□□□□□ -1.9
CDC40	YDR364C	NUP53	Q03790	475 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	CDC123	Q05791	360 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	YPQ1	Q12010	308 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	VAM3	Q12241	283 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	OCA6	Q12454	224 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	MTR10	Q99189	972 aa		3.15	□□□□□ -1.9
CDC40	YDR364C	YMR084W	A2P2R3	262 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	COR1	P07256	457 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	GCY1	P14065	312 aa	Known RBP RIP-Chip data	3.14	□□□□□ -1.91	not detected
CDC40	YDR364C	PRP16	P15938	1071 aa	Predicted RBP	3.14	□□□□□ -1.91
CDC40	YDR364C	YCR006C	P25350	157 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	ELO2	P25358	347 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	PEX34	P25584	144 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	RIM1	P32445	135 aa	Known RBP	3.14	□□□□□ -1.91
CDC40	YDR364C	HIR2	P32480	875 aa		3.14	□□□□□ -1.91
CDC40	YDR364C	NIP1	P32497	812 aa	Known RBP	3.14	□□□□□ -1.91
CDC40	YDR364C	KAR9	P32526	644 aa		3.14	□□□□□ -1.91

Retrieved 100 of 5,963 RNA–protein pairs in 17.3 ms