RNA–Protein interactions for RNA: ENST00000596163.5

SHKBP1-212, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 785 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-212ENST00000596163 SNX21Q969T3 373 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 BUD13Q9BRD0 619 aaKnown RBP eCLIP19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 FTOQ9C0B1 505 aaKnown RBP eCLIP19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 LTBP2Q14767 1821 aa19.46■□□□□ 0.71
SHKBP1-212ENST00000596163 DOCK5Q9H7D0 1870 aa19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 K7ELQ4 463 aaPredicted RBP19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 PDCP20941 246 aa19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 ZNF618Q5T7W0 954 aa19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 DEFB128Q7Z7B8 93 aa19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 RPAINQ86UA6 219 aa19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 HERVK_113Q902F9 699 aa19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 HAS1Q92839 578 aa19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 INTS4Q96HW7 963 aaKnown RBP19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 PCDHA12Q9UN75 941 aa19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 PCDHA2Q9Y5H9 948 aa19.45■□□□□ 0.7
SHKBP1-212ENST00000596163 MCM7P33993 719 aa19.44■□□□□ 0.7
SHKBP1-212ENST00000596163 MARCH8Q5T0T0 291 aa19.44■□□□□ 0.7
SHKBP1-212ENST00000596163 NME8Q8N427 588 aa19.44■□□□□ 0.7
SHKBP1-212ENST00000596163 WNT8BQ93098 351 aa19.44■□□□□ 0.7
SHKBP1-212ENST00000596163 VAV3Q9UKW4 847 aa19.44■□□□□ 0.7
SHKBP1-212ENST00000596163 IGSF9BQ9UPX0 1349 aa19.44■□□□□ 0.7
SHKBP1-212ENST00000596163 OATP04181 439 aa19.43■□□□□ 0.7
SHKBP1-212ENST00000596163 ATP4AP20648 1035 aa19.43■□□□□ 0.7
SHKBP1-212ENST00000596163 PSMC5P62195 406 aa19.43■□□□□ 0.7
SHKBP1-212ENST00000596163 EPHA7Q15375 998 aa19.43■□□□□ 0.7
SHKBP1-212ENST00000596163 XKR3Q5GH77 459 aa19.43■□□□□ 0.7
SHKBP1-212ENST00000596163 TTC38Q5R3I4 469 aa19.43■□□□□ 0.7
SHKBP1-212ENST00000596163 MTHFD1LQ6UB35 978 aa19.43■□□□□ 0.7
SHKBP1-212ENST00000596163 HSCBQ8IWL3 235 aa19.43■□□□□ 0.7
SHKBP1-212ENST00000596163 HSFX4A0A1B0GTS1 333 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 SMIM35A0A1B0GVV1 85 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 HSFX3A0A1B0GWH4 333 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 KIF28PB7ZC32 967 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 MAGEB2O15479 319 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 CXCL10P02778 98 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 P4HBP07237 508 aaKnown RBP19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 KLRC1P26715 233 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 TXKP42681 527 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 FXR1P51114 621 aaKnown RBP eCLIP19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 PRKCEQ02156 737 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 ZNF174Q15697 407 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 FAM26DQ5JW98 314 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 IER5Q5VY09 327 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 NCAPH2Q6IBW4 605 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 OTOP2Q7RTS6 562 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 TRMT1LQ7Z2T5 733 aaKnown RBP19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 MTMR9Q96QG7 549 aa19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 TTC12Q9H892 705 aaPredicted RBP19.42■□□□□ 0.7
SHKBP1-212ENST00000596163 M0QZ92 97 aa19.41■□□□□ 0.7
SHKBP1-212ENST00000596163 QARSP47897 775 aaKnown RBP19.41■□□□□ 0.7
SHKBP1-212ENST00000596163 RILPL1Q5EBL4 403 aa19.41■□□□□ 0.7
SHKBP1-212ENST00000596163 TRAF7Q6Q0C0 670 aa19.41■□□□□ 0.7
SHKBP1-212ENST00000596163 RUFY4Q6ZNE9 571 aa19.41■□□□□ 0.7
SHKBP1-212ENST00000596163 TRAPPC12Q8WVT3 735 aa19.41■□□□□ 0.7
SHKBP1-212ENST00000596163 DNAJB3Q8WWF6 145 aa19.41■□□□□ 0.7
SHKBP1-212ENST00000596163 ZBBXA8MT70 800 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 EML1O00423 815 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 ZNF862O60290 1169 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 NBNO60934 754 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 EFCAB14O75071 495 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 BAIAP3O94812 1187 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 CTSHP09668 335 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 OR52Z1P0C646 297 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 TMOD1P28289 359 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 SMAD3P84022 425 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 RASIP1Q5U651 963 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 GPR153Q6NV75 609 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 CNKSR3Q6P9H4 555 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 BANK1Q8NDB2 785 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 NEK9Q8TD19 979 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 NIFKQ9BYG3 293 aaKnown RBP19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 FAM49AQ9H0Q0 323 aaPredicted RBP19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 SLC4A7Q9Y6M7 1214 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 TRIOBPQ9H2D6 2365 aa19.4■□□□□ 0.7
SHKBP1-212ENST00000596163 DDX11L8A8MPP1 907 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 WNT7AO00755 349 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 MRPS6P82932 125 aaKnown RBP19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 IKBKEQ14164 716 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 UGCGQ16739 394 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 TMEM266Q2M3C6 531 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 OTUD6AQ7L8S5 288 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 EXOC8Q8IYI6 725 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 ZNF710Q8N1W2 664 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 TMEM60Q9H2L4 133 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 ZSWIM4Q9H7M6 989 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 SEPT9Q9UHD8 586 aaPredicted RBP19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 PPME1Q9Y570 386 aa19.39■□□□□ 0.69
SHKBP1-212ENST00000596163 ABHD14A-ACY1A0A1B0GW23 586 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 ZBTB42B2RXF5 422 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 LAD1O00515 517 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 HSP90AA1P07900 732 aaKnown RBP19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 KCNJ6P48051 423 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 SPIRE1Q08AE8 756 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 GPNMBQ14956 572 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 C4orf19Q8IY42 314 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 METTL13Q8N6R0 699 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 SEPT8Q92599 483 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 VWCEQ96DN2 955 aa19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 JPH2Q9BR39 696 aaPredicted RBP19.38■□□□□ 0.69
SHKBP1-212ENST00000596163 C22orf31O95567 290 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms