RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 NIPA1Q7RTP0 329 aa16.1■□□□□ 0.17
SNHG1-213ENST00000540725 KHSRPQ92945 711 aaKnown RBP eCLIP16.1■□□□□ 0.172e-12■■■□□ 16.9
SNHG1-213ENST00000540725 CLP1Q92989 425 aaKnown RBP16.1■□□□□ 0.17
SNHG1-213ENST00000540725 ZNF689Q96CS4 500 aaPredicted RBP16.1■□□□□ 0.17
SNHG1-213ENST00000540725 C11orf84Q9BUA3 381 aaPredicted RBP16.1■□□□□ 0.17
SNHG1-213ENST00000540725 CD320Q9NPF0 282 aa16.1■□□□□ 0.17
SNHG1-213ENST00000540725 H3BQ06 376 aaPredicted RBP16.09■□□□□ 0.17
SNHG1-213ENST00000540725 DDX39AO00148 427 aaKnown RBP16.09■□□□□ 0.17
SNHG1-213ENST00000540725 DGKIO75912 1065 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 CCNE2O96020 404 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 CPA1P15085 419 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 IL9P15248 144 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 ADD1P35611 737 aaKnown RBP16.09■□□□□ 0.17
SNHG1-213ENST00000540725 SLC26A2P50443 739 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 METAP2P50579 478 aaKnown RBP eCLIP16.09■□□□□ 0.17
SNHG1-213ENST00000540725 BTG3Q14201 252 aaPredicted RBP16.09■□□□□ 0.17
SNHG1-213ENST00000540725 PFKFB3Q16875 520 aaPredicted RBP16.09■□□□□ 0.17
SNHG1-213ENST00000540725 JAKMIP3Q5VZ66 844 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 FAM178BQ8IXR5 827 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 NEK9Q8TD19 979 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 PABPC5Q96DU9 382 aaKnown RBP16.09■□□□□ 0.17
SNHG1-213ENST00000540725 FTHL17Q9BXU8 183 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 IGSF9BQ9UPX0 1349 aa16.09■□□□□ 0.17
SNHG1-213ENST00000540725 FNDC1Q4ZHG4 1894 aaPredicted RBP16.09■□□□□ 0.17
SNHG1-213ENST00000540725 IGKV6D-21A0A0A0MT36 114 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 SMIM35A0A1B0GVV1 85 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 GRXCR2A6NFK2 248 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 FAM86B1E9PN63 330 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 BACH1O14867 736 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 GRM6O15303 877 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 FAM86B2P0C5J1 330 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 SCG2P13521 617 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 APOBRQ0VD83 1088 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 PAK2Q13177 524 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 COL19A1Q14993 1142 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 PUS10Q3MIT2 529 aaKnown RBP16.08■□□□□ 0.16
SNHG1-213ENST00000540725 FAM160B1Q5W0V3 765 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 MTHFD1LQ6UB35 978 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 ABHD15Q6UXT9 468 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 EP400NLQ6ZTU2 488 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 RTN4RL1Q86UN2 441 aaPredicted RBP16.08■□□□□ 0.16
SNHG1-213ENST00000540725 PLA2G4DQ86XP0 818 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 CELF4Q9BZC1 486 aaKnown RBP16.08■□□□□ 0.16
SNHG1-213ENST00000540725 LMAN2LQ9H0V9 348 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 PADI3Q9ULW8 664 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 KDM3AQ9Y4C1 1321 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 C5orf42Q9H799 3197 aa16.08■□□□□ 0.16
SNHG1-213ENST00000540725 MUC6Q6W4X9 2439 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 IGLV3-22A0A075B6J6 115 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 CCDC196A0A1B0GTZ2 297 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 ESYT2A0FGR8 921 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 HBP1O60381 514 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 KRT76Q01546 638 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 Q6ZUG5 572 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 NPAS4Q8IUM7 802 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 CCDC60Q8IWA6 550 aaPredicted RBP16.07■□□□□ 0.16
SNHG1-213ENST00000540725 GJD3Q8N144 294 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 CRIPAKQ8N1N5 446 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 NME8Q8N427 588 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 ATP8B4Q8TF62 1192 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 CRYGNQ8WXF5 182 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 KCNB2Q92953 911 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 BRF1Q92994 677 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 LRFN3Q9BTN0 628 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 CLDND1Q9NY35 253 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 PLXNA4Q9HCM2 1894 aa16.07■□□□□ 0.16
SNHG1-213ENST00000540725 COL1A2P08123 1366 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 NID2Q14112 1375 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 IPO5O00410 1097 aaKnown RBP16.06■□□□□ 0.16
SNHG1-213ENST00000540725 DHX15O43143 795 aaKnown RBP16.06■□□□□ 0.16
SNHG1-213ENST00000540725 CYP3A4P08684 503 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 KLRC1P26715 233 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 TMEM31Q5JXX7 168 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 PDXDC2PQ6P474 469 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 CMTR2Q8IYT2 770 aaKnown RBP16.06■□□□□ 0.16
SNHG1-213ENST00000540725 REXO1Q8N1G1 1221 aaKnown RBP16.06■□□□□ 0.16
SNHG1-213ENST00000540725 JAKMIP1Q96N16 626 aaKnown RBP16.06■□□□□ 0.16
SNHG1-213ENST00000540725 UIMC1Q96RL1 719 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 PLVAPQ9BX97 442 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 ZMYND12Q9H0C1 365 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 ZNF302Q9NR11 478 aa16.06■□□□□ 0.16
SNHG1-213ENST00000540725 MRPL42Q9Y6G3 142 aaKnown RBP16.06■□□□□ 0.16
SNHG1-213ENST00000540725 ADAMTS3O15072 1205 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 NCK2O43639 380 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 STAG3L1P0CL83 205 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 SSTR3P32745 418 aaPredicted RBP16.05■□□□□ 0.16
SNHG1-213ENST00000540725 PKN1Q16512 942 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 TMEM266Q2M3C6 531 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 MCTP2Q6DN12 878 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 MIS18BP1Q6P0N0 1132 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 BLOC1S2Q6QNY1 142 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 CCDC12Q8WUD4 166 aaPredicted RBP16.05■□□□□ 0.16
SNHG1-213ENST00000540725 TMX1Q9H3N1 280 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 C6orf50Q9HD87 102 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 GINS2Q9Y248 185 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 SNX14Q9Y5W7 946 aa16.05■□□□□ 0.16
SNHG1-213ENST00000540725 PI4K2BG5E9Z4 385 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 GPR37L1O60883 481 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 CSPG5O95196 566 aa16.04■□□□□ 0.16
SNHG1-213ENST00000540725 MMP1P03956 469 aa16.04■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 160 ms