RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 SWSAP1Q6NVH7 229 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 MIS18BP1Q6P0N0 1132 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 PDXDC2PQ6P474 469 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 MTHFD1LQ6UB35 978 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 RASGRP4Q8TDF6 673 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 CCDC12Q8WUD4 166 aaPredicted RBP14.78□□□□□ -0.04
CPSF1-204ENST00000529288 PPP1R16BQ96T49 567 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 ZNF577Q9BSK1 485 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 SLC26A6Q9BXS9 759 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 CELF4Q9BZC1 486 aaKnown RBP14.78□□□□□ -0.04
CPSF1-204ENST00000529288 ZNF302Q9NR11 478 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 TRANK1O15050 2925 aa14.78□□□□□ -0.04
CPSF1-204ENST00000529288 COL4A4P53420 1690 aaPredicted RBP14.77□□□□□ -0.04
CPSF1-204ENST00000529288 H3BQ06 376 aaPredicted RBP14.77□□□□□ -0.05
CPSF1-204ENST00000529288 PRPF3O43395 683 aaKnown RBP14.77□□□□□ -0.05
CPSF1-204ENST00000529288 HBP1O60381 514 aa14.77□□□□□ -0.05
CPSF1-204ENST00000529288 RPLP2P05387 115 aaKnown RBP14.77□□□□□ -0.05
CPSF1-204ENST00000529288 RPS6KB1P23443 525 aa14.77□□□□□ -0.05
CPSF1-204ENST00000529288 PSMA5P28066 241 aa14.77□□□□□ -0.05
CPSF1-204ENST00000529288 RCAN1P53805 252 aa14.77□□□□□ -0.05
CPSF1-204ENST00000529288 PAN2Q504Q3 1202 aaKnown RBP14.77□□□□□ -0.05
CPSF1-204ENST00000529288 ABHD15Q6UXT9 468 aa14.77□□□□□ -0.05
CPSF1-204ENST00000529288 NIPA1Q7RTP0 329 aa14.77□□□□□ -0.05
CPSF1-204ENST00000529288 TEX2Q8IWB9 1127 aa14.77□□□□□ -0.05
CPSF1-204ENST00000529288 REXO1Q8N1G1 1221 aaKnown RBP14.77□□□□□ -0.05
CPSF1-204ENST00000529288 LRFN2Q9ULH4 789 aa14.77□□□□□ -0.05
CPSF1-204ENST00000529288 PADI3Q9ULW8 664 aa14.77□□□□□ -0.05
CPSF1-204ENST00000529288 ADGRA3Q8IWK6 1321 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-204ENST00000529288 SMIM35A0A1B0GVV1 85 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 IPO5O00410 1097 aaKnown RBP14.76□□□□□ -0.05
CPSF1-204ENST00000529288 ATG7O95352 703 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 GNA11P29992 359 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 BMPR1AP36894 532 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 SLC26A2P50443 739 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 PKN1Q16512 942 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 PRR16Q569H4 304 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 RTN4RL1Q86UN2 441 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-204ENST00000529288 CCDC60Q8IWA6 550 aaPredicted RBP14.76□□□□□ -0.05
CPSF1-204ENST00000529288 ATP8B4Q8TF62 1192 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 LINC01599Q8WXQ3 324 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 KCNB2Q92953 911 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 NSUN3Q9H649 340 aaKnown RBP14.76□□□□□ -0.05
CPSF1-204ENST00000529288 EPHX3Q9H6B9 360 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 NCOA5Q9HCD5 579 aaKnown RBP14.76□□□□□ -0.05
CPSF1-204ENST00000529288 SAMM50Q9Y512 469 aa14.76□□□□□ -0.05
CPSF1-204ENST00000529288 TCF20Q9UGU0 1960 aaKnown RBP14.76□□□□□ -0.05
CPSF1-204ENST00000529288 GRM6O15303 877 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 REC8O95072 547 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 RB1P06400 928 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 CYP3A4P08684 503 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 STAG3L1P0CL83 205 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 IL9P15248 144 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 SSTR3P32745 418 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-204ENST00000529288 LEXMQ3ZCV2 418 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 MCTP2Q6DN12 878 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 PTCRAQ6ISU1 281 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-204ENST00000529288 NME8Q8N427 588 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 METTL13Q8N6R0 699 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-204ENST00000529288 LARP6Q9BRS8 491 aaKnown RBP14.75□□□□□ -0.05
CPSF1-204ENST00000529288 C11orf84Q9BUA3 381 aaPredicted RBP14.75□□□□□ -0.05
CPSF1-204ENST00000529288 FTHL17Q9BXU8 183 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 ZMYND12Q9H0C1 365 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 IGFLR1Q9H665 355 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 CDHR5Q9HBB8 845 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 ALG13Q9NP73 1137 aaKnown RBP14.75□□□□□ -0.05
CPSF1-204ENST00000529288 CLDND1Q9NY35 253 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 VPS54Q9P1Q0 977 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 RWDD3Q9Y3V2 267 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 TTC28Q96AY4 2481 aa14.75□□□□□ -0.05
CPSF1-204ENST00000529288 IGLV3-22A0A075B6J6 115 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 IGKV6D-21A0A0A0MT36 114 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 ESYT2A0FGR8 921 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 DHX15O43143 795 aaKnown RBP14.74□□□□□ -0.05
CPSF1-204ENST00000529288 RPS6KA5O75582 802 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 DGKIO75912 1065 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 PSAPP07602 524 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 GATMP50440 423 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 NLRP5P59047 1200 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 SETQ01105 290 aaPredicted RBP14.74□□□□□ -0.05
CPSF1-204ENST00000529288 ZNF484Q5JVG2 852 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 SPOUT1Q5T280 376 aaKnown RBP14.74□□□□□ -0.05
CPSF1-204ENST00000529288 NPAS4Q8IUM7 802 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 BICD2Q8TD16 824 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 C1QTNF1Q9BXJ1 281 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 TBC1D22BQ9NU19 505 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 GABBR1Q9UBS5 961 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 NOC2LQ9Y3T9 749 aaKnown RBP14.74□□□□□ -0.05
CPSF1-204ENST00000529288 MRPL42Q9Y6G3 142 aaKnown RBP14.74□□□□□ -0.05
CPSF1-204ENST00000529288 SQORQ9Y6N5 450 aa14.74□□□□□ -0.05
CPSF1-204ENST00000529288 MICAL3Q7RTP6 2002 aa14.73□□□□□ -0.05
CPSF1-204ENST00000529288 IGSF9BQ9UPX0 1349 aa14.73□□□□□ -0.05
CPSF1-204ENST00000529288 DENND3A2RUS2 1198 aa14.73□□□□□ -0.05
CPSF1-204ENST00000529288 ATP4AP20648 1035 aa14.73□□□□□ -0.05
CPSF1-204ENST00000529288 PDIA3P30101 505 aaKnown RBP14.73□□□□□ -0.05
CPSF1-204ENST00000529288 CLUL1Q15846 466 aa14.73□□□□□ -0.05
CPSF1-204ENST00000529288 KIZQ2M2Z5 673 aa14.73□□□□□ -0.05
CPSF1-204ENST00000529288 KIAA0319LQ8IZA0 1049 aa14.73□□□□□ -0.05
CPSF1-204ENST00000529288 CCDC148Q8NFR7 591 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 96.2 ms