RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 EP400NLQ6ZTU2 488 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 NIPA1Q7RTP0 329 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 TRMT1LQ7Z2T5 733 aaKnown RBP15.11■□□□□ 0.01
CPSF4-210ENST00000469897 NME8Q8N427 588 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 CRYGNQ8WXF5 182 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 PHKBQ93100 1093 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 ZNF689Q96CS4 500 aaPredicted RBP15.11■□□□□ 0.01
CPSF4-210ENST00000469897 ZMYND12Q9H0C1 365 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 CDHR5Q9HBB8 845 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 CD320Q9NPF0 282 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 TRPV2Q9Y5S1 764 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 MYH7BA7E2Y1 1941 aa15.11■□□□□ 0.01
CPSF4-210ENST00000469897 IGLV3-22A0A075B6J6 115 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 H3BQ06 376 aaPredicted RBP15.1■□□□□ 0.01
CPSF4-210ENST00000469897 IPO5O00410 1097 aaKnown RBP15.1■□□□□ 0.01
CPSF4-210ENST00000469897 HBP1O60381 514 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 RB1P06400 928 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 LINC00271P0C7V0 271 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 ATP4AP20648 1035 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 RPS6KB1P23443 525 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 SLC26A2P50443 739 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 CCT2P78371 535 aaKnown RBP15.1■□□□□ 0.01
CPSF4-210ENST00000469897 KRT76Q01546 638 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 TMEM266Q2M3C6 531 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 FAM160B1Q5W0V3 765 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 MIS18BP1Q6P0N0 1132 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 PDXDC2PQ6P474 469 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 CCDC60Q8IWA6 550 aaPredicted RBP15.1■□□□□ 0.01
CPSF4-210ENST00000469897 LINC01599Q8WXQ3 324 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 KHSRPQ92945 711 aaKnown RBP eCLIP15.1■□□□□ 0.01
CPSF4-210ENST00000469897 ZNF577Q9BSK1 485 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 C1QTNF1Q9BXJ1 281 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 ZNF302Q9NR11 478 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 GINS2Q9Y248 185 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 SQORQ9Y6N5 450 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 TTC28Q96AY4 2481 aa15.1■□□□□ 0.01
CPSF4-210ENST00000469897 PRRC2BQ5JSZ5 2229 aaKnown RBP15.09■□□□□ 0.01
CPSF4-210ENST00000469897 C5orf67F2Z3F1 127 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 IBSPP21815 317 aaPredicted RBP15.09■□□□□ 0.01
CPSF4-210ENST00000469897 AKAP17AQ02040 695 aaKnown RBP15.09■□□□□ 0.01
CPSF4-210ENST00000469897 NFX1Q12986 1120 aaKnown RBP15.09■□□□□ 0.01
CPSF4-210ENST00000469897 PAK2Q13177 524 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 TIGD5Q53EQ6 642 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 MCTP2Q6DN12 878 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 PTCRAQ6ISU1 281 aaPredicted RBP15.09■□□□□ 0.01
CPSF4-210ENST00000469897 CKAP2LQ8IYA6 745 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 KIAA0319LQ8IZA0 1049 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 CRIPAKQ8N1N5 446 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 RASGRP4Q8TDF6 673 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 ATP8B4Q8TF62 1192 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 CLP1Q92989 425 aaKnown RBP15.09■□□□□ 0.01
CPSF4-210ENST00000469897 CCDC136Q96JN2 1154 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 FTHL17Q9BXU8 183 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 TMX1Q9H3N1 280 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 NSUN3Q9H649 340 aaKnown RBP15.09■□□□□ 0.01
CPSF4-210ENST00000469897 RC3H2Q9HBD1 1191 aaKnown RBP15.09■□□□□ 0.01
CPSF4-210ENST00000469897 ALG13Q9NP73 1137 aaKnown RBP15.09■□□□□ 0.01
CPSF4-210ENST00000469897 TBC1D22BQ9NU19 505 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 ADGRA3Q8IWK6 1321 aa15.09■□□□□ 0.01
CPSF4-210ENST00000469897 ESYT2A0FGR8 921 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 GRXCR2A6NFK2 248 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 CSPG5O95196 566 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 IL9P15248 144 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 PSMA5P28066 241 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 GNA11P29992 359 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 PDIA3P30101 505 aaKnown RBP15.08■□□□□ 0
CPSF4-210ENST00000469897 NTRK3Q16288 839 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 PRR16Q569H4 304 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 ZNF484Q5JVG2 852 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 FAM178BQ8IXR5 827 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 REXO1Q8N1G1 1221 aaKnown RBP15.08■□□□□ 0
CPSF4-210ENST00000469897 FBXL16Q8N461 479 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 NEK9Q8TD19 979 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 CCDC12Q8WUD4 166 aaPredicted RBP15.08■□□□□ 0
CPSF4-210ENST00000469897 C11orf84Q9BUA3 381 aaPredicted RBP15.08■□□□□ 0
CPSF4-210ENST00000469897 SLC26A6Q9BXS9 759 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 NOC2LQ9Y3T9 749 aaKnown RBP15.08■□□□□ 0
CPSF4-210ENST00000469897 RWDD3Q9Y3V2 267 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 IGSF9BQ9UPX0 1349 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 TRANK1O15050 2925 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 MUC3AQ02505 3323 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 REV3LO60673 3130 aa15.08■□□□□ 0
CPSF4-210ENST00000469897 PTPRSQ13332 1948 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 STAG3L1P0CL83 205 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 GATMP50440 423 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 PAN2Q504Q3 1202 aaKnown RBP15.07■□□□□ 0
CPSF4-210ENST00000469897 NPAS4Q8IUM7 802 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 GJD3Q8N144 294 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 PABPC5Q96DU9 382 aaKnown RBP15.07■□□□□ 0
CPSF4-210ENST00000469897 PPP1R16BQ96T49 567 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 AGXT2Q9BYV1 514 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 NCOA5Q9HCD5 579 aaKnown RBP15.07■□□□□ 0
CPSF4-210ENST00000469897 CLDND1Q9NY35 253 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 VPS54Q9P1Q0 977 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 GABBR1Q9UBS5 961 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 ST3GAL5Q9UNP4 418 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 PLAGL2Q9UPG8 496 aa15.07■□□□□ 0
CPSF4-210ENST00000469897 MAFBQ9Y5Q3 323 aaPredicted RBP15.07■□□□□ 0
CPSF4-210ENST00000469897 MRPL42Q9Y6G3 142 aaKnown RBP15.07■□□□□ 0
CPSF4-210ENST00000469897 KDM3AQ9Y4C1 1321 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms