RNA–Protein interactions for RNA: YKL173W

SNU114, Transcript of GTPase component of U5 snRNP involved in mRNA splicing via spliceosome, yeast

Gene SNU114, Length 3,027 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU114	YKL173W	NTC20	P38302	140 aa	Predicted RBP	2.26	□□□□□ -2.05
SNU114	YKL173W	SAS2	P40963	338 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	YFH1	Q07540	174 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	SOR2	Q07786	357 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	RAV1	P47104	1357 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	YLR278C	Q05854	1341 aa		2.26	□□□□□ -2.05
SNU114	YKL173W	IKI3	Q06706	1349 aa	Known RBP	2.26	□□□□□ -2.05
SNU114	YKL173W	MES1	P00958	751 aa	Known RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	GPH1	P06738	902 aa	Known RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	NFT1	P0CE68	1218 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	SPS22	P25380	463 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	HSP104	P31539	908 aa	Known RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	HMX1	P32339	317 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	RIM1	P32445	135 aa	Known RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	SRB4	P32569	687 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	YSC83	P32792	385 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	SHP1	P34223	423 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	KDX1	P36005	433 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	VPS45	P38932	577 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	ALD5	P40047	520 aa	Known RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	YIR014W	P40570	242 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	TFG2	P41896	400 aa	Predicted RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	YJL043W	P47053	257 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	YGR126W	P53274	230 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	ZPR1	P53303	486 aa	Known RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	MNT4	P53745	580 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	NUP100	Q02629	959 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	SNU56	Q03782	492 aa	Known RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	MDM36	Q06820	579 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	YAP7	Q08182	245 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	YOR1	P53049	1477 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	SPP41	P38904	1435 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	MRP2	P10663	115 aa	Predicted RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	BAR1	P12630	587 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	VPS17	P32913	551 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	BNA4	P38169	460 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	VHC1	P38329	1120 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	EPL1	P43572	832 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	IRC7	P43623	340 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	PHO86	P46956	311 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	UBP8	P50102	471 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	RTC4	P53850	401 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	YMR111C	Q04461	462 aa	Predicted RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	YPR078C	Q06813	372 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	CAT8	P39113	1433 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	SEC62	P21825	274 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	PTP1	P25044	335 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	MCM4	P30665	933 aa	Known RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	DOA4	P32571	926 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	PTR2	P32901	601 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	ASK1	P35734	292 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	ECM4	P36156	370 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	MMS4	P38257	691 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	SPP381	P38282	291 aa	Predicted RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	EFM2	P38347	419 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	RTT107	P38850	1070 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	YMR124W	P39523	943 aa	Known RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	YPS6	P40583	537 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	SNG1	P46950	547 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	GCD14	P46959	383 aa	Predicted RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	TOS2	P50078	622 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	GIM3	P53900	129 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	YPL014W	Q02606	381 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	PFA4	Q12006	378 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	YDR061W	Q12298	539 aa		2.25	□□□□□ -2.05
SNU114	YKL173W	BRR1	Q99177	341 aa	Predicted RBP	2.25	□□□□□ -2.05
SNU114	YKL173W	VPS63	O13549	108 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	RHO2	P06781	192 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	PMR1	P13586	950 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	SPE2	P21182	396 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	AIM17	P23180	465 aa	Known RBP	2.24	□□□□□ -2.05
SNU114	YKL173W	NDI1	P32340	513 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	DPH5	P32469	300 aa	Predicted RBP	2.24	□□□□□ -2.05
SNU114	YKL173W	YKL097C	P34245	136 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	QDR3	P38227	689 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	ARN1	P38731	627 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	PMT5	P52867	743 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	RHO4	Q00246	291 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	EKI1	Q03764	534 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	TPO3	Q06451	622 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	MCH4	Q08268	501 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	MED2	Q12124	431 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	2.24	□□□□□ -2.05	not detected
SNU114	YKL173W	CRC1	Q12289	327 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	RNH203	Q12338	110 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	AIM45	Q12480	344 aa	Known RBP	2.24	□□□□□ -2.05
SNU114	YKL173W	ILV5	P06168	395 aa	Known RBP	2.24	□□□□□ -2.05
SNU114	YKL173W	TYR1	P20049	452 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	YUR1	P26725	428 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	MTW1	P39731	289 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	GAT2	P40209	560 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	YJR011C	P47086	261 aa	Predicted RBP	2.24	□□□□□ -2.05
SNU114	YKL173W	TRF5	P48561	642 aa	Known RBP	2.24	□□□□□ -2.05
SNU114	YKL173W	ARP5	P53946	755 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	MPS1	P54199	764 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	STP1	Q00947	519 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	YVH1	Q02256	364 aa	Known RBP	2.24	□□□□□ -2.05
SNU114	YKL173W	VTH1	P40438	1549 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	VTH2	P40890	1549 aa		2.24	□□□□□ -2.05
SNU114	YKL173W	YIL177C	P40434	1758 aa		2.23	□□□□□ -2.05

Retrieved 100 of 5,963 RNA–protein pairs in 109.3 ms