RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	HXT4	P32467	576 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	PRP19	P32523	503 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	MSN4	P33749	630 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	RRN10	P38204	145 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	EHT1	P38295	451 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	SOH1	P38633	127 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	MNL1	P38888	796 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	HXT6	P39003	570 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	HXT7	P39004	570 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	YJL206C	P39529	758 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	ELP2	P42935	788 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	LIA1	P47120	325 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	FHN1	P53279	174 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	SED5	Q01590	340 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	RMI1	Q02685	241 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	OAZ1	Q02803	292 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	GIP3	Q03016	1276 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	STE23	Q06010	1027 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	SEC10	Q06245	871 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	YLR053C	Q12026	108 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	YPR022C	Q12139	1133 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	YPR011C	Q12251	326 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	RGT2	Q12300	763 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	YPL247C	Q12523	523 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	SRN2	Q99176	213 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	NMT1	P14743	455 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	GUK1	P15454	187 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	SEN2	P16658	377 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	CWH43	P25618	953 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	SDH3	P33421	198 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	RPS1A	P33442	255 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	ASK1	P35734	292 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	SHM2	P37291	469 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	NTC20	P38302	140 aa	Predicted RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	YBR197C	P38306	217 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	MRX1	P40050	688 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	COA1	P40452	197 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	YRB1	P41920	201 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	GCN20	P43535	752 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	ARC1	P46672	376 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	HOC1	P47124	396 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	YGR054W	P53235	642 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	DCP2	P53550	970 aa	Known RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	MRS2	Q01926	470 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	USA1	Q03714	838 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	ECM11	Q04110	302 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	MUS81	Q04149	632 aa	Predicted RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	PML1	Q07930	204 aa	Predicted RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	YTM1	Q12024	460 aa	Predicted RBP	4.24	□□□□□ -1.73
SSH4	YKL124W	GLO4	Q12320	285 aa		4.24	□□□□□ -1.73
SSH4	YKL124W	PRP8	P33334	2413 aa	Known RBP	4.23	□□□□□ -1.73
SSH4	YKL124W	ARG4	P04076	463 aa	Predicted RBP	4.23	□□□□□ -1.73
SSH4	YKL124W	RPS21A	P0C0V8	87 aa	Known RBP	4.23	□□□□□ -1.73
SSH4	YKL124W	TOP3	P13099	656 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	OLE1	P21147	510 aa	Known RBP	4.23	□□□□□ -1.73
SSH4	YKL124W	OCA4	P25366	362 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	PCL2	P25693	308 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	SIN4	P32259	974 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	ISC10	P32645	267 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	COX13	P32799	129 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	UGP1	P32861	499 aa	Known RBP	4.23	□□□□□ -1.73
SSH4	YKL124W	RIM2	P38127	377 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	ALG14	P38242	237 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	PHO89	P38361	574 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	RFC3	P38629	340 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	APQ12	P40532	138 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	GNP1	P48813	663 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	AIF1	P52923	378 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	SLM2	P53955	656 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	ERG13	P54839	491 aa	Known RBP	4.23	□□□□□ -1.73
SSH4	YKL124W	GTB1	Q04924	702 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	YLR346C	Q06139	101 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	RAD34	Q06665	692 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	TEN1	Q07921	160 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	PUS9	Q12069	462 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	YPL245W	Q12179	454 aa	Known RBP	4.23	□□□□□ -1.73
SSH4	YKL124W	RTN2	Q12443	393 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	YCL012C	Q8J0M4	134 aa		4.23	□□□□□ -1.73
SSH4	YKL124W	ARG3	P05150	338 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	RHO2	P06781	192 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	URA4	P20051	364 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	SBA1	P28707	216 aa	Known RBP	4.22	□□□□□ -1.73
SSH4	YKL124W	CDC5	P32562	705 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	KAP122	P32767	1081 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	ASC1	P38011	319 aa	Known RBP	4.22	□□□□□ -1.73
SSH4	YKL124W	ADH5	P38113	351 aa	Known RBP	4.22	□□□□□ -1.73
SSH4	YKL124W	BMT2	P38278	337 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	APD1	P38281	316 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	COS111	P38308	924 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	PTI1	P39927	425 aa	Predicted RBP	4.22	□□□□□ -1.73
SSH4	YKL124W	ATF1	P40353	525 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	IBA57	P47158	497 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	MIG2	P53035	382 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	MNT4	P53745	580 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	SUR7	P54003	302 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	YAP6	Q03935	383 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	MGR3	Q04472	501 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	RIF2	Q06208	395 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	SPE4	Q12455	300 aa		4.22	□□□□□ -1.73
SSH4	YKL124W	TDH1	P00360	332 aa	Known RBP	4.21	□□□□□ -1.73

Retrieved 100 of 5,963 RNA–protein pairs in 269.7 ms