RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	LNP1	P38878	278 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	FAD1	P38913	306 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	GIP4	P39732	760 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	MEP1	P40260	492 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	GSM1	P42950	618 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	PBP1	P53297	722 aa	Known RBP	4.81	□□□□□ -1.64
CDC4	YFL009W	OKP1	P53298	406 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	SPR6	Q01684	191 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	GRX5	Q02784	150 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	ARL3	Q02804	198 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	YPL071C	Q02864	156 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	SLD5	Q03406	294 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	MFB1	Q04922	465 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	MHR1	Q06630	226 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	YLL058W	Q12198	575 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	COS2	P0CX12	379 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	COS3	P0CX13	379 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	BAR1	P12630	587 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	LAT1	P12695	482 aa	Known RBP	4.81	□□□□□ -1.64
CDC4	YFL009W	APA1	P16550	321 aa	Known RBP	4.81	□□□□□ -1.64
CDC4	YFL009W	HPR1	P17629	752 aa	Known RBP	4.81	□□□□□ -1.64
CDC4	YFL009W	RIM1	P32445	135 aa	Known RBP	4.81	□□□□□ -1.64
CDC4	YFL009W	PCL6	P40038	420 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	GPP1	P41277	250 aa	Known RBP	4.81	□□□□□ -1.64
CDC4	YFL009W	RRT6	P53117	311 aa	Predicted RBP	4.81	□□□□□ -1.64
CDC4	YFL009W	BUD32	P53323	261 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	NUP116	Q02630	1113 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	KAP120	Q02932	1032 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	PHO92	Q06390	306 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	YLR413W	Q06689	675 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	ZEO1	Q08245	113 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	HFI1	Q12060	488 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	RTN2	Q12443	393 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	YCL001W-B	Q96VH2	84 aa		4.81	□□□□□ -1.64
CDC4	YFL009W	STE3	P06783	470 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	MAS1	P10507	462 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	NAM9	P27929	486 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	VMA5	P31412	392 aa	Known RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	ARO7	P32178	256 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	SFP1	P32432	683 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	FRE1	P32791	686 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	LST4	P34239	828 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YPT52	P36018	234 aa	Known RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	FIS1	P40515	155 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	ERR3	P42222	437 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	AVT1	P47082	602 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YJR141W	P47172	347 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	CUL3	P53202	744 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YGR168C	P53293	376 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YCL001W-A	P87012	153 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	PEX25	Q02969	394 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YML131W	Q03102	365 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	PRM15	Q03262	622 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	PPN1	Q04119	674 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	ECM30	Q06673	1274 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	IRC3	Q06683	689 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YDL121C	Q07541	149 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YPL199C	Q08954	240 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YLL056C	Q12177	298 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	PFK27	Q12471	397 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	TIM9	O74700	87 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	SUC2	P00724	532 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	TRP3	P00937	484 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	ZWF1	P11412	505 aa	Known RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	TCP1	P12612	559 aa	Known RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	AMD2	P22580	549 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YCL068C	P25593	260 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	RPS7A	P26786	190 aa	Known RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	BEM3	P32873	1128 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	ZRT3	P34240	503 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	TAT1	P38085	619 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	ROT2	P38138	954 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	FTH1	P38310	465 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YBR238C	P38330	731 aa	Known RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	COS8	P38723	381 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	TIR3	P40552	269 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	HXT16	P47185	567 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	RPS12	P48589	143 aa	Known RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	YGR026W	P53217	278 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	MNT4	P53745	580 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	TGL2	P54857	326 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YAT1	P80235	687 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	MAK3	Q03503	176 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	TDA1	Q03533	586 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YML037C	Q03703	340 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	ENT5	Q03769	411 aa	Known RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	TPP1	Q03796	238 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	BCH1	Q05029	724 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	YLR224W	Q05947	369 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	GAS2	Q06135	555 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	GPI11	Q06636	219 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	LUC7	Q07508	261 aa	Predicted RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	PUS9	Q12069	462 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	LYS21	Q12122	440 aa	Known RBP	4.8	□□□□□ -1.64
CDC4	YFL009W	OSW2	Q12202	724 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	RBD2	Q12270	262 aa		4.8	□□□□□ -1.64
CDC4	YFL009W	AI3	P03877	415 aa		4.79	□□□□□ -1.64
CDC4	YFL009W	RAD7	P06779	565 aa		4.79	□□□□□ -1.64
CDC4	YFL009W	RPS4A	P0CX35	261 aa	Known RBP	4.79	□□□□□ -1.64
CDC4	YFL009W	RPS4B	P0CX36	261 aa	Known RBP	4.79	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 46.4 ms