RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 POLR3EQ9NVU0 708 aa16.96■□□□□ 0.31
TRIM28-207ENST00000597136 SCN5AQ14524 2016 aa16.96■□□□□ 0.31
TRIM28-207ENST00000597136 CHMP4BP1P59074 171 aa16.95■□□□□ 0.3
TRIM28-207ENST00000597136 NBR1Q14596 966 aa16.95■□□□□ 0.3
TRIM28-207ENST00000597136 DGKDQ16760 1214 aa16.95■□□□□ 0.3
TRIM28-207ENST00000597136 BRDTQ58F21 947 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-207ENST00000597136 GIMAP8Q8ND71 665 aaPredicted RBP16.95■□□□□ 0.3
TRIM28-207ENST00000597136 USP28Q96RU2 1077 aa16.95■□□□□ 0.3
TRIM28-207ENST00000597136 FTOQ9C0B1 505 aaKnown RBP eCLIP16.95■□□□□ 0.3
TRIM28-207ENST00000597136 SLC9A2Q9UBY0 812 aa16.95■□□□□ 0.3
TRIM28-207ENST00000597136 DDX25Q9UHL0 483 aaKnown RBP16.95■□□□□ 0.3
TRIM28-207ENST00000597136 CLIC4Q9Y696 253 aa16.95■□□□□ 0.3
TRIM28-207ENST00000597136 NFASCO94856 1347 aa16.95■□□□□ 0.3
TRIM28-207ENST00000597136 CCNE2O96020 404 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 HOXD8P13378 290 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-207ENST00000597136 KRT85P78386 507 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 TTC38Q5R3I4 469 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 UTP14CQ5TAP6 766 aaKnown RBP16.94■□□□□ 0.3
TRIM28-207ENST00000597136 PPP4R3AQ6IN85 833 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 MOXD1Q6UVY6 613 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 DPF3Q92784 378 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 SLC5A5Q92911 643 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 SDF4Q9BRK5 362 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 C16orf70Q9BSU1 422 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 MTG1Q9BT17 334 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-207ENST00000597136 JPH1Q9HDC5 661 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-207ENST00000597136 CFAP45Q9UL16 551 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 PCDHB6Q9Y5E3 794 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 ELP1O95163 1332 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 TET1Q8NFU7 2136 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 NOP56O00567 594 aaKnown RBP16.94■□□□□ 0.3
TRIM28-207ENST00000597136 NCLP19338 710 aaKnown RBP16.94■□□□□ 0.3
TRIM28-207ENST00000597136 CDK7P50613 346 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 SETQ01105 290 aaPredicted RBP16.94■□□□□ 0.3
TRIM28-207ENST00000597136 CEBPZQ03701 1054 aaKnown RBP16.94■□□□□ 0.3
TRIM28-207ENST00000597136 ITGA7Q13683 1181 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 SNX17Q15036 470 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 NBPF20Q3BBV1 942 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 TRIM60Q495X7 471 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 TRIM50Q86XT4 487 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 POTEDQ86YR6 584 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 ETNPPLQ8TBG4 499 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 HAS1Q92839 578 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 ATP11BQ9Y2G3 1177 aa16.94■□□□□ 0.3
TRIM28-207ENST00000597136 KPNA6O60684 536 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 CABYRO75952 493 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 LGALS2P05162 132 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 TCF7P36402 384 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-207ENST00000597136 NASPP49321 788 aaPredicted RBP16.93■□□□□ 0.3
TRIM28-207ENST00000597136 RTP1P59025 263 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 ACTR2P61160 394 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 SF3A1Q15459 793 aaKnown RBP16.93■□□□□ 0.3
TRIM28-207ENST00000597136 ZNF174Q15697 407 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 SEPT1Q8WYJ6 367 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 GBP4Q96PP9 640 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 PCYT2Q99447 389 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 HTATIP2Q9BUP3 242 aa16.93■□□□□ 0.3
TRIM28-207ENST00000597136 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.93■□□□□ 0.3
TRIM28-207ENST00000597136 LTBP2Q14767 1821 aa16.92■□□□□ 0.3
TRIM28-207ENST00000597136 A0A0U1RQG5 324 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-207ENST00000597136 ARVCFO00192 962 aa16.92■□□□□ 0.3
TRIM28-207ENST00000597136 MCM7P33993 719 aa16.92■□□□□ 0.3
TRIM28-207ENST00000597136 TLE2Q04725 743 aa16.92■□□□□ 0.3
TRIM28-207ENST00000597136 SLC43A3Q8NBI5 491 aa16.92■□□□□ 0.3
TRIM28-207ENST00000597136 SCAND2PQ9GZW5 306 aaPredicted RBP16.92■□□□□ 0.3
TRIM28-207ENST00000597136 TBC1D22BQ9NU19 505 aa16.92■□□□□ 0.3
TRIM28-207ENST00000597136 HAS3O00219 553 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 PSMD10O75832 226 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 ATG7O95352 703 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 YEATS4O95619 227 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 GCFC2P16383 781 aaKnown RBP16.91■□□□□ 0.3
TRIM28-207ENST00000597136 PSEN2P49810 448 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 PTPAQ15257 358 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 KIAA0753Q2KHM9 967 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 LRCH2Q5VUJ6 765 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 ABHD15Q6UXT9 468 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 C7orf61Q8IZ16 206 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 LINC00301Q8NCQ3 95 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 LEO1Q8WVC0 666 aaPredicted RBP16.91■□□□□ 0.3
TRIM28-207ENST00000597136 TMEM60Q9H2L4 133 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 GDPD2Q9HCC8 539 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 KCNMB3Q9NPA1 279 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 RCOR1Q9UKL0 485 aa16.91■□□□□ 0.3
TRIM28-207ENST00000597136 ARID2Q68CP9 1835 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 H3BRB1 525 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 EVI5O60447 810 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 PQBP1O60828 265 aaKnown RBP16.9■□□□□ 0.3
TRIM28-207ENST00000597136 GAS7O60861 476 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 F2P00734 622 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 ORC2Q13416 577 aaPredicted RBP16.9■□□□□ 0.3
TRIM28-207ENST00000597136 HIC1Q14526 733 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 SLC39A14Q15043 492 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 C1orf53Q5VUE5 145 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 RIT2Q99578 217 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 NAP1L4Q99733 375 aaKnown RBP16.9■□□□□ 0.3
TRIM28-207ENST00000597136 UNC45AQ9H3U1 944 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 RNPEPQ9H4A4 650 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 TUT1Q9H6E5 874 aaKnown RBP16.9■□□□□ 0.3
TRIM28-207ENST00000597136 CEP131Q9UPN4 1083 aa16.9■□□□□ 0.3
TRIM28-207ENST00000597136 BMP15O95972 392 aa16.89■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms