RNA–Protein interactions for RNA: ENST00000480525.5

HDAC6-223, Transcript of histone deacetylase 6, human

TSL 3

Gene HDAC6, Length 412 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-223	ENST00000480525	CEP131	Q9UPN4	1083 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	SMC3	Q9UQE7	1217 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	PCDHA10	Q9Y5I2	948 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	SQOR	Q9Y6N5	450 aa		5.76	□□□□□ -1.49
HDAC6-223	ENST00000480525	MICAL3	Q7RTP6	2002 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	RRN3P2	A6NIE6	340 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	BTBD18	B2RXH4	712 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	NOP56	O00567	594 aa	Known RBP	5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	MSH4	O15457	936 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	DYNC1LI2	O43237	492 aa	Predicted RBP	5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	NEMF	O60524	1076 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	BAG4	O95429	457 aa	Known RBP	5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	PGK1	P00558	417 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	LGALS2	P05162	132 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	SCP2	P22307	547 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	ZNF76	P36508	570 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	FXR2	P51116	673 aa	Known RBP eCLIP	5.75	□□□□□ -1.49	4e-6	■■■□□ 18.2
HDAC6-223	ENST00000480525	SPIRE1	Q08AE8	756 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	ITGB3BP	Q13352	177 aa	Predicted RBP	5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	ITGA7	Q13683	1181 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	BECN1	Q14457	450 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	PCBP1	Q15365	356 aa	Known RBP eCLIP	5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	LY6K	Q17RY6	165 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	PRPF38B	Q5VTL8	546 aa	Known RBP	5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	JAKMIP3	Q5VZ66	844 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	FAM160B1	Q5W0V3	765 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	MIS18BP1	Q6P0N0	1132 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	EEPD1	Q7L9B9	569 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	CCDC155	Q8N6L0	562 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	AFG1L	Q8WV93	481 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	BBX	Q8WY36	941 aa	Predicted RBP	5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	RSPH1	Q8WYR4	309 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	KAT2B	Q92831	832 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	KCNN1	Q92952	543 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	ATP6V0A1	Q93050	837 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	AK8	Q96MA6	479 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	ZNF577	Q9BSK1	485 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	TEKT3	Q9BXF9	490 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	RAB34	Q9BZG1	259 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	AZI2	Q9H6S1	392 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	DDX25	Q9UHL0	483 aa	Known RBP	5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	TBX21	Q9UL17	535 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	MYH11	P35749	1972 aa		5.75	□□□□□ -1.49
HDAC6-223	ENST00000480525	GRIN2D	O15399	1336 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	KDM3A	Q9Y4C1	1321 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	RANBP2	P49792	3224 aa	Known RBP	5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	SI	P14410	1827 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	GSTTP1	A0A1W2PQM5	241 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	MYADML2	A6NDP7	307 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	DCDC2C	A8MYV0	355 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525		H3BQV1	296 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	MAGEB2	O15479	319 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	HBP1	O60381	514 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	EVI5	O60447	810 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	GAS7	O60861	476 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	EFCAB14	O75071	495 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	ATP9A	O75110	1047 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	PSAP	P07602	524 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	CLTB	P09497	229 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	AR	P10275	920 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	SYT1	P21579	422 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	TCF7	P36402	384 aa	Predicted RBP	5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	SOX10	P56693	466 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	ACTR2	P61160	394 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	ATP2C1	P98194	919 aa	Predicted RBP	5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	NR5A1	Q13285	461 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	PTK7	Q13308	1070 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	BFSP2	Q13515	415 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	INF2	Q27J81	1249 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	PRR16	Q569H4	304 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	ZNF484	Q5JVG2	852 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	GJC2	Q5T442	439 aa	Predicted RBP	5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	LRCH2	Q5VUJ6	765 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	LARP1B	Q659C4	914 aa	Known RBP	5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	HAUS3	Q68CZ6	603 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	GPR153	Q6NV75	609 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	PIK3AP1	Q6ZUJ8	805 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	CYFIP1	Q7L576	1253 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	SERINC5	Q86VE9	423 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	C4orf19	Q8IY42	314 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	NME8	Q8N427	588 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	IGSF22	Q8N9C0	903 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	USP38	Q8NB14	1042 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	OXER1	Q8TDS5	423 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	ATP8B4	Q8TF62	1192 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	PIBF1	Q8WXW3	757 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	HAS1	Q92839	578 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	JPH2	Q9BR39	696 aa	Predicted RBP	5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	POLR3C	Q9BUI4	534 aa	Predicted RBP	5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	NIFK	Q9BYG3	293 aa	Known RBP	5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	PRO3102	Q9H379	93 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	DISC1	Q9NRI5	854 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	TMEM260	Q9NX78	707 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	VAV3	Q9UKW4	847 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	PCDHA12	Q9UN75	941 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	KCNJ14	Q9UNX9	436 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	ATP6V1D	Q9Y5K8	247 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	TRIOBP	Q9H2D6	2365 aa		5.74	□□□□□ -1.49
HDAC6-223	ENST00000480525	TET1	Q8NFU7	2136 aa		5.74	□□□□□ -1.49

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms