RNA–Protein interactions for RNA: ENST00000369733.7

COL17A1-202, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene COL17A1, Length 5,488 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-202ENST00000369733 ESRRAP11474 423 aaPredicted RBP17.21■□□□□ 0.35
COL17A1-202ENST00000369733 PMS2P54278 862 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 ZNF804BA4D1E1 1349 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 H7C0C1 242 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 ATP5OP48047 213 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 CCDC93Q567U6 631 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 USP17L2Q6R6M4 530 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 PROCA1Q8NCQ7 364 aaPredicted RBP17.21■□□□□ 0.35
COL17A1-202ENST00000369733 POMGNT1Q8WZA1 660 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 CHMP6Q96FZ7 201 aa17.21■□□□□ 0.35
COL17A1-202ENST00000369733 FBXO2Q9UK22 296 aaPredicted RBP17.21■□□□□ 0.35
COL17A1-202ENST00000369733 KIF1CO43896 1103 aaKnown RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 MYO1EQ12965 1108 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 LRRC23Q53EV4 343 aaPredicted RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 GPATCH4Q5T3I0 446 aaKnown RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 NLRP10Q86W26 655 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 TEKT1Q969V4 418 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 EPN3Q9H201 632 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 PCIF1Q9H4Z3 704 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 H0Y3Z8 333 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 PLA2G4AP47712 749 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 RHOT2Q8IXI1 618 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 DDX47Q9H0S4 455 aaKnown RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 IFT122Q9HBG6 1241 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 LIMA1Q9UHB6 759 aaKnown RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 MRPL11Q9Y3B7 192 aaKnown RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 PPP1R37O75864 691 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 LMNAP02545 664 aaKnown RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 PLS3P13797 630 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 POLR2BP30876 1174 aaKnown RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 NR1I3Q14994 352 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 IL25Q9H293 177 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 L2HGDHQ9H9P8 463 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 SNX12Q9UMY4 172 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 PFKFB3Q16875 520 aaPredicted RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 CERKLQ49MI3 558 aaPredicted RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 RFX6Q8HWS3 928 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 RIN2Q8WYP3 895 aaPredicted RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 CHP1Q99653 195 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 AMNQ9BXJ7 453 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 TUBE1Q9UJT0 475 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 USP17L8P0C7I0 530 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 P4HA1P13674 534 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 RAD9BQ6WBX8 426 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 DYNLL2Q96FJ2 89 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 PACSIN2Q9UNF0 486 aaPredicted RBP17.2■□□□□ 0.34
COL17A1-202ENST00000369733 PCDHB4Q9Y5E5 795 aa17.2■□□□□ 0.34
COL17A1-202ENST00000369733 TESPA1A2RU30 521 aaPredicted RBP17.19■□□□□ 0.34
COL17A1-202ENST00000369733 RNF8O76064 485 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 RWDD2BP57060 319 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 PROM2Q8N271 834 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 NLRP7Q8WX94 980 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 NCAPGQ9BPX3 1015 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 NEO1Q92859 1461 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 KRT1P04264 644 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 ICA1Q05084 483 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 FAM83BQ5T0W9 1011 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 NBPF10Q6P3W6 841 aaKnown RBP17.19■□□□□ 0.34
COL17A1-202ENST00000369733 CCNI2Q6ZMN8 369 aaPredicted RBP17.19■□□□□ 0.34
COL17A1-202ENST00000369733 KCNV2Q8TDN2 545 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 ZNF473Q8WTR7 871 aaKnown RBP17.19■□□□□ 0.34
COL17A1-202ENST00000369733 C8orf37Q96NL8 207 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.19■□□□□ 0.34
COL17A1-202ENST00000369733 ASAP1Q9ULH1 1129 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 UNC13BO14795 1591 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 GLI2P10070 1586 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 HEG1Q9ULI3 1381 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 TMOD1P28289 359 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 MDH1P40925 334 aaKnown RBP17.19■□□□□ 0.34
COL17A1-202ENST00000369733 DRP2Q13474 957 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 KRT26Q7Z3Y9 468 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 CDKL2Q92772 493 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 ACCSQ96QU6 501 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 ECT2Q9H8V3 914 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 TTLL3Q9Y4R7 772 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 USP17L3A6NCW0 530 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 USP17L4A6NCW7 530 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 NOP56O00567 594 aaKnown RBP17.19■□□□□ 0.34
COL17A1-202ENST00000369733 ZWINTO95229 277 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 UBE2SQ16763 222 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 FAM47EQ6ZV65 393 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 KCTD1Q719H9 257 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 USP17L1Q7RTZ2 530 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 SH2D3CQ8N5H7 860 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 SCYL1Q96KG9 808 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 FHOD1Q9Y613 1164 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 SYNGAP1Q96PV0 1343 aa17.19■□□□□ 0.34
COL17A1-202ENST00000369733 ATP5HO75947 161 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 RCAN1P53805 252 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 FBXL5Q9UKA1 691 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.18■□□□□ 0.34
COL17A1-202ENST00000369733 CFAP73A6NFT4 308 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 H0YCG3 227 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 SLC16A2P36021 539 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 SPARCL1Q14515 664 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 TMCO4Q5TGY1 634 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 TSPYL2Q9H2G4 693 aaPredicted RBP17.18■□□□□ 0.34
COL17A1-202ENST00000369733 QRICH2Q9H0J4 1663 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 ABCC3O15438 1527 aa17.18■□□□□ 0.34
COL17A1-202ENST00000369733 GARSP41250 739 aaKnown RBP17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms