RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 LRCH2Q5VUJ6 765 aa16.93■□□□□ 0.3
NUP54-213ENST00000513352 GJA10Q969M2 543 aa16.93■□□□□ 0.3
NUP54-213ENST00000513352 SPATA33Q96N06 139 aa16.93■□□□□ 0.3
NUP54-213ENST00000513352 MBOAT7Q96N66 472 aa16.93■□□□□ 0.3
NUP54-213ENST00000513352 GNEQ9Y223 722 aaKnown RBP16.93■□□□□ 0.3
NUP54-213ENST00000513352 CENPFP49454 3210 aa16.93■□□□□ 0.3
NUP54-213ENST00000513352 SYNRGQ9UMZ2 1314 aa16.93■□□□□ 0.3
NUP54-213ENST00000513352 TFRCP02786 760 aaKnown RBP16.92■□□□□ 0.3
NUP54-213ENST00000513352 ARHGAP1Q07960 439 aa16.92■□□□□ 0.3
NUP54-213ENST00000513352 ITGB3BPQ13352 177 aaPredicted RBP16.92■□□□□ 0.3
NUP54-213ENST00000513352 ORC2Q13416 577 aaPredicted RBP16.92■□□□□ 0.3
NUP54-213ENST00000513352 LAMC2Q13753 1193 aa16.92■□□□□ 0.3
NUP54-213ENST00000513352 ETNPPLQ8TBG4 499 aa16.92■□□□□ 0.3
NUP54-213ENST00000513352 ZNF396Q96N95 335 aaPredicted RBP16.92■□□□□ 0.3
NUP54-213ENST00000513352 SENP7Q9BQF6 1050 aa16.92■□□□□ 0.3
NUP54-213ENST00000513352 TEKT3Q9BXF9 490 aa16.92■□□□□ 0.3
NUP54-213ENST00000513352 BCAS3Q9H6U6 928 aa16.92■□□□□ 0.3
NUP54-213ENST00000513352 JPH1Q9HDC5 661 aaPredicted RBP16.92■□□□□ 0.3
NUP54-213ENST00000513352 ZDHHC9Q9Y397 364 aa16.92■□□□□ 0.3
NUP54-213ENST00000513352 KIAA0100Q14667 2235 aaKnown RBP16.91■□□□□ 0.3
NUP54-213ENST00000513352 CHMP2AO43633 222 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 FARP2O94887 1054 aaPredicted RBP16.91■□□□□ 0.3
NUP54-213ENST00000513352 GJB1P08034 283 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 OR52Z1P0C646 297 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 NCLP19338 710 aaKnown RBP16.91■□□□□ 0.3
NUP54-213ENST00000513352 DDIT3P35638 169 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 TXKP42681 527 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 BEX3Q00994 111 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 BRDTQ58F21 947 aaPredicted RBP16.91■□□□□ 0.3
NUP54-213ENST00000513352 LHX8Q68G74 356 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 METTL7BQ6UX53 244 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 SLFN12Q8IYM2 578 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 U2AF1L4Q8WU68 220 aaKnown RBP16.91■□□□□ 0.3
NUP54-213ENST00000513352 AFG1LQ8WV93 481 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 ABHD8Q96I13 439 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 FAM20AQ96MK3 541 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 FTOQ9C0B1 505 aaKnown RBP eCLIP16.91■□□□□ 0.3
NUP54-213ENST00000513352 TMEM60Q9H2L4 133 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.91■□□□□ 0.3
NUP54-213ENST00000513352 TBC1D22BQ9NU19 505 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 SLC9A2Q9UBY0 812 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 CIZ1Q9ULV3 898 aaPredicted RBP16.91■□□□□ 0.3
NUP54-213ENST00000513352 CEP131Q9UPN4 1083 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 Q9Y3F1 56 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 NFASCO94856 1347 aa16.91■□□□□ 0.3
NUP54-213ENST00000513352 KBTBD13C9JR72 458 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 TBX3O15119 743 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 CPT1AP50416 773 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 GJA9P57773 515 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 IRX5P78411 483 aaPredicted RBP16.9■□□□□ 0.3
NUP54-213ENST00000513352 PTGDRQ13258 359 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 SF3A1Q15459 793 aaKnown RBP16.9■□□□□ 0.3
NUP54-213ENST00000513352 FSCN1Q16658 493 aaKnown RBP16.9■□□□□ 0.3
NUP54-213ENST00000513352 GNASQ5JWF2 1037 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 RNF180Q86T96 592 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 SLC5A5Q92911 643 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 RIT2Q99578 217 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 UPF3AQ9H1J1 476 aaKnown RBP16.9■□□□□ 0.3
NUP54-213ENST00000513352 KCNMB3Q9NPA1 279 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 CHMP5Q9NZZ3 219 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 TFIP11Q9UBB9 837 aaKnown RBP16.9■□□□□ 0.3
NUP54-213ENST00000513352 SAMM50Q9Y512 469 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 ATP6V1DQ9Y5K8 247 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 CLIC4Q9Y696 253 aa16.9■□□□□ 0.3
NUP54-213ENST00000513352 MYADML2A6NDP7 307 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 CCDC85CA6NKD9 419 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 ZEB2O60315 1214 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 SGPL1O95470 568 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 BMP15O95972 392 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 MYL3P08590 195 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 LRRC41Q15345 812 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 NCAPH2Q6IBW4 605 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 ARRDC4Q8NCT1 418 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 PPTC7Q8NI37 304 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 HAS1Q92839 578 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 USP28Q96RU2 1077 aa16.89■□□□□ 0.29
NUP54-213ENST00000513352 ADAMTS4O75173 837 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 PSMD10O75832 226 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 MMP3P08254 477 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 GJA8P48165 433 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 CHMP4BP1P59074 171 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 ACTR2P61160 394 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 KRT76Q01546 638 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 DNM1Q05193 864 aaKnown RBP16.88■□□□□ 0.29
NUP54-213ENST00000513352 STK38Q15208 465 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 TMEM266Q2M3C6 531 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 HSDL1Q3SXM5 330 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 UTP14CQ5TAP6 766 aaKnown RBP16.88■□□□□ 0.29
NUP54-213ENST00000513352 EMID1Q96A84 441 aaPredicted RBP16.88■□□□□ 0.29
NUP54-213ENST00000513352 UNC45AQ9H3U1 944 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 TTC12Q9H892 705 aaPredicted RBP16.88■□□□□ 0.29
NUP54-213ENST00000513352 PCDHA12Q9UN75 941 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 ELP1O95163 1332 aa16.88■□□□□ 0.29
NUP54-213ENST00000513352 LAD1O00515 517 aa16.87■□□□□ 0.29
NUP54-213ENST00000513352 DHX15O43143 795 aaKnown RBP16.87■□□□□ 0.29
NUP54-213ENST00000513352 ATP2C1P98194 919 aaPredicted RBP16.87■□□□□ 0.29
NUP54-213ENST00000513352 KCNA10Q16322 511 aa16.87■□□□□ 0.29
NUP54-213ENST00000513352 DGKDQ16760 1214 aa16.87■□□□□ 0.29
NUP54-213ENST00000513352 MIS18BP1Q6P0N0 1132 aa16.87■□□□□ 0.29
NUP54-213ENST00000513352 MIER3Q7Z3K6 550 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms