RNA–Protein interactions for RNA: ENST00000474020.5

ATPAF1-204, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 535 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-204ENST00000474020 CALM3P0DP25 149 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 ITPKAP23677 461 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 GUCY1B3Q02153 619 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 RASGRF1Q13972 1273 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 SF3B3Q15393 1217 aaKnown RBP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 ZNF423Q2M1K9 1284 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 RRP12Q5JTH9 1297 aaKnown RBP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 EXOSC6Q5RKV6 272 aaKnown RBP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 SPTY2D1Q68D10 685 aaPredicted RBP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 RNF43Q68DV7 783 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 APOA5Q6Q788 366 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 PI16Q6UXB8 463 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 BEND4Q6ZU67 534 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 SGMS1Q86VZ5 419 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 MICU3Q86XE3 530 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 NBPF5PQ86XG9 351 aaPredicted RBP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 TBC1D10CQ8IV04 446 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 IFNL3Q8IZI9 196 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 SYNE4Q8N205 404 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 MARCH10Q8NA82 808 aaPredicted RBP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 TDRD7Q8NHU6 1098 aaKnown RBP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 STAG1Q8WVM7 1258 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 SETDB2Q96T68 719 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 NIF3L1Q9GZT8 377 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 EHD4Q9H223 541 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 KCNF1Q9H3M0 494 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 ARMT1Q9H993 441 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 CBX8Q9HC52 389 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 BSDC1Q9NW68 430 aaPredicted RBP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 WWC3Q9ULE0 1092 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 MRVI1Q9Y6F6 885 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 NRAPQ86VF7 1730 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 ARAP2Q8WZ64 1704 aa6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 PDS5AQ29RF7 1337 aaKnown RBP6.75□□□□□ -1.33
ATPAF1-204ENST00000474020 RREB1Q92766 1687 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 MYH7P12883 1935 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 NUP98P52948 1817 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 TCRBV5S4A2TA0A5A2 114 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 SMTNL1A8MU46 457 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 TIAF1O95411 115 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 DEXIO95424 95 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 DLGAP3O95886 979 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 BMP15O95972 392 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 ANTXR2P58335 489 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 PPARAQ07869 468 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 ITPK1Q13572 414 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 VPS72Q15906 364 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 CCDC178Q5BJE1 867 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 ANO1Q5XXA6 986 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 TPTE2Q6XPS3 522 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 MTERF4Q7Z6M4 381 aaKnown RBP6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 CATIPQ7Z7H3 387 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 IQCA1Q86XH1 822 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 CERS3Q8IU89 383 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 ZDHHC13Q8IUH4 622 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 C12orf50Q8NA57 414 aaPredicted RBP6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 PIBF1Q8WXW3 757 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 CCDC74AQ96AQ1 378 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 PGBD1Q96JS3 809 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 USP28Q96RU2 1077 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 SLC26A6Q9BXS9 759 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 CRNKL1Q9BZJ0 848 aaKnown RBP6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 ZNF576Q9H609 170 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 RBM28Q9NW13 759 aaKnown RBP6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 ABCF2Q9UG63 623 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 SLIT2O94813 1529 aa6.74□□□□□ -1.33
ATPAF1-204ENST00000474020 LAMB2P55268 1798 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 MYO1BO43795 1136 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 PPP6R2O75170 966 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 RPS6KA4O75676 772 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 CYP11A1P05108 521 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 CMA1P23946 247 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 CD97P48960 835 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 GSDMDP57764 484 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 GSTO1P78417 241 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 KIF23Q02241 960 aaPredicted RBP6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 RILPL1Q5EBL4 403 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 SLC10A5Q5PT55 438 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 MEX3CQ5U5Q3 659 aaKnown RBP6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 KRT40Q6A162 431 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 OLFM4Q6UX06 510 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 LUZP1Q86V48 1076 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 LINC00301Q8NCQ3 95 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 TIGD1Q96MW7 591 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 CSRNP1Q96S65 589 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 MAP7D2Q96T17 732 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 BRIP1Q9BX63 1249 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 ZFYVE1Q9HBF4 777 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 LY9Q9HBG7 655 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 PCMTD2Q9NV79 361 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 NARFQ9UHQ1 456 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 R3HCC1Q9Y3T6 440 aaKnown RBP6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 ZNF831Q5JPB2 1677 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 KAT6BQ8WYB5 2073 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 ZNF804BA4D1E1 1349 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 NEDD4P46934 1319 aa6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.73□□□□□ -1.33
ATPAF1-204ENST00000474020 NID2Q14112 1375 aa6.72□□□□□ -1.33
ATPAF1-204ENST00000474020 GSG1L2A8MUP6 293 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms