RNA–Protein interactions for RNA: ENST00000409588.1

NIF3L1-205, Transcript of NGG1 interacting factor 3 like 1, humanhuman

TSL 1 (best) BASIC

Gene NIF3L1, Length 1,269 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIF3L1-205ENST00000409588 H3BRB1 525 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 GNAT1P11488 350 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 RXRAP19793 462 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 CHMP4BP1P59074 171 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 BLOC1S2Q6QNY1 142 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 CMTR1Q8N1G2 835 aaKnown RBP16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 CDX2Q99626 313 aaPredicted RBP16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 C16orf70Q9BSU1 422 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 TUT1Q9H6E5 874 aaKnown RBP16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 SCUBE2Q9NQ36 999 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 RTEL1Q9NZ71 1219 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 HDAC6Q9UBN7 1215 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 BRPF3Q9ULD4 1205 aa16.68■□□□□ 0.26
NIF3L1-205ENST00000409588 KLF18A0A0U1RQI7 1052 aa16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 BAIAP3O94812 1187 aa16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 SELPP16109 830 aa16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 GDF6Q6KF10 455 aaPredicted RBP16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 OTOP2Q7RTS6 562 aa16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 HEATR3Q7Z4Q2 680 aa16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 SCLYQ96I15 445 aa16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 TTYH1Q9H313 450 aaPredicted RBP16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 ZNF576Q9H609 170 aa16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 RIC8AQ9NPQ8 531 aa16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 V9GY48 417 aaPredicted RBP16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 COL6A3P12111 3177 aa16.67■□□□□ 0.26
NIF3L1-205ENST00000409588 GOLGA8AA7E2F4 631 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 GOLGA8BA8MQT2 603 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 EIF5BO60841 1220 aaKnown RBP16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 FUT2Q10981 343 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 COL9A3Q14050 684 aaPredicted RBP16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 CYFIP1Q7L576 1253 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 CCDC12Q8WUD4 166 aaPredicted RBP16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 TNPO1Q92973 898 aaKnown RBP16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 FAM161BQ96MY7 647 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 JAKMIP1Q96N16 626 aaKnown RBP16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 ALG1Q9BT22 464 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 PBX4Q9BYU1 374 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 AGXT2Q9BYV1 514 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 BARHL2Q9NY43 387 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 ZNF215Q9UL58 517 aaPredicted RBP16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 PCDHA6Q9UN73 950 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 PCDHA8Q9Y5H6 950 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 PCDHA11Q9Y5I1 949 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 SNX14Q9Y5W7 946 aa16.66■□□□□ 0.26
NIF3L1-205ENST00000409588 EFCAB14O75071 495 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 CAND2O75155 1236 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 METAP2P50579 478 aaKnown RBP eCLIP16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 NAPAP54920 295 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 EVCP57679 992 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 Q6ZUG5 572 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 SLC9A7Q96T83 725 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 GPR20Q99678 358 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 FTOQ9C0B1 505 aaKnown RBP eCLIP16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 SLC28A3Q9HAS3 691 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 JADE2Q9NQC1 790 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 PPP4R2Q9NY27 417 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 CXXC1Q9P0U4 656 aaPredicted RBP16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 UBIAD1Q9Y5Z9 338 aa16.65■□□□□ 0.26
NIF3L1-205ENST00000409588 C17orf102A2RUQ5 167 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 SMCO2A6NFE2 343 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 TTLL13PA6NNM8 815 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 KIF28PB7ZC32 967 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 LGALS2P05162 132 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 ZNF286BP0CG31 522 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 CKBP12277 381 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 ATP2A2P16615 1042 aaKnown RBP16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 RPS6KB1P23443 525 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 HOXC8P31273 242 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 AP3B2Q13367 1082 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 MTMR1Q13613 665 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 LCE2DQ5TA82 110 aaPredicted RBP16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 LRRC8DQ7L1W4 858 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 DEFB128Q7Z7B8 93 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 SEPT1Q8WYJ6 367 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 GPKOWQ92917 476 aaPredicted RBP eCLIP16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 VWCEQ96DN2 955 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 TCEANC2Q96MN5 208 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 CTAGE1Q96RT6 745 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 FAM217BQ9NTX9 383 aaPredicted RBP16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 MYH7BA7E2Y1 1941 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 EMSYQ7Z589 1322 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 CNTNAP5Q8WYK1 1306 aa16.64■□□□□ 0.25
NIF3L1-205ENST00000409588 hCG_1642624A0A1W2PR95 340 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 ZBBXA8MT70 800 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 PRPF3O43395 683 aaKnown RBP16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 CXCL10P02778 98 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 RPLP2P05387 115 aaKnown RBP16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 ITGB5P18084 799 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 ADCY7P51828 1080 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 SEMA3FQ13275 785 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 PFKFB3Q16875 520 aaPredicted RBP16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 WWC2Q6AWC2 1192 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 SERINC5Q86VE9 423 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 RAB11FIP4Q86YS3 637 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 BRF1Q92994 677 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 ZFP91Q96JP5 570 aaPredicted RBP16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 TM6SF1Q9BZW5 370 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 NID2Q14112 1375 aa16.63■□□□□ 0.25
NIF3L1-205ENST00000409588 ABHD14A-ACY1A0A1B0GW23 586 aa16.62■□□□□ 0.25
NIF3L1-205ENST00000409588 ESYT2A0FGR8 921 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms