RNA–Protein interactions for RNA: ENST00000371817.7

COL5A1-201, Transcript of collagen type V alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL5A1, Length 8,471 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1-201ENST00000371817 ZMYM3Q14202 1370 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 TCHHQ07283 1943 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 PJA2O43164 708 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 PDE5AO76074 875 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 PATL1Q86TB9 770 aaKnown RBP16.41■□□□□ 0.22
COL5A1-201ENST00000371817 RFX6Q8HWS3 928 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 MAGEF1Q9HAY2 307 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.41■□□□□ 0.22
COL5A1-201ENST00000371817 COPEO14579 308 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 HSPD1P10809 573 aaKnown RBP16.41■□□□□ 0.22
COL5A1-201ENST00000371817 YWHAHQ04917 246 aaPredicted RBP16.41■□□□□ 0.22
COL5A1-201ENST00000371817 DDHD1Q8NEL9 900 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 ZBTB18Q99592 522 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 SIKE1Q9BRV8 207 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 ZBED2Q9BTP6 218 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 CCDC78A2IDD5 438 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 IL10P22301 178 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 YARSP54577 528 aaKnown RBP16.41■□□□□ 0.22
COL5A1-201ENST00000371817 UBE3AQ05086 875 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 EFTUD2Q15029 972 aaKnown RBP eCLIP16.41■□□□□ 0.22
COL5A1-201ENST00000371817 PDIK1LQ8N165 341 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 USP28Q96RU2 1077 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 SLC38A10Q9HBR0 1119 aa16.41■□□□□ 0.22
COL5A1-201ENST00000371817 BPIFB4P59827 614 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 ASZ1Q8WWH4 475 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 TRIM66O15016 1216 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 RNF217Q8TC41 542 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 DCTN4Q9UJW0 460 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 MBD4O95243 580 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 PYGMP11217 842 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 GSPT1P15170 499 aaKnown RBP16.4■□□□□ 0.22
COL5A1-201ENST00000371817 GINS4Q9BRT9 223 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 KITP10721 976 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 HIC1Q14526 733 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 KPNB1Q14974 876 aaKnown RBP16.4■□□□□ 0.22
COL5A1-201ENST00000371817 ZNF555Q8NEP9 628 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 XAGE3Q8WTP9 111 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 KCNJ14Q9UNX9 436 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 LDHBP07195 334 aaKnown RBP16.4■□□□□ 0.22
COL5A1-201ENST00000371817 SERPINB4P48594 390 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 PARVGQ9HBI0 331 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 FGD5Q6ZNL6 1462 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 RASSF9O75901 435 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 PTK2Q05397 1052 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 OTUD7BQ6GQQ9 843 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 LZICQ8WZA0 190 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 VPS54Q9P1Q0 977 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 CCDC22O60826 627 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 TSTA3Q13630 321 aaPredicted RBP16.4■□□□□ 0.22
COL5A1-201ENST00000371817 NME9Q86XW9 330 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 ACRBPQ8NEB7 543 aa16.4■□□□□ 0.22
COL5A1-201ENST00000371817 C16orf96A6NNT2 1141 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 CCDC188H7C350 402 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 EPHB1P54762 984 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 F8W031 263 aaPredicted RBP16.39■□□□□ 0.21
COL5A1-201ENST00000371817 NFIBO00712 420 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 ANXA1P04083 346 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 MKRN3Q13064 507 aaKnown RBP16.39■□□□□ 0.21
COL5A1-201ENST00000371817 CC2D2AQ9P2K1 1620 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 MLH1P40692 756 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 ADAM9Q13443 819 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 DCDC2Q9UHG0 476 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 RGS12O14924 1447 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 TAC1P20366 129 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 GNL1P36915 607 aaPredicted RBP16.39■□□□□ 0.21
COL5A1-201ENST00000371817 THOC5Q13769 683 aaKnown RBP16.39■□□□□ 0.21
COL5A1-201ENST00000371817 ZNF827Q17R98 1081 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 SNRNP27Q8WVK2 155 aaKnown RBP16.39■□□□□ 0.21
COL5A1-201ENST00000371817 PCDHA13Q9Y5I0 950 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 KLHL25Q9H0H3 589 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 PCDHA7Q9UN72 937 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 SYNGAP1Q96PV0 1343 aa16.39■□□□□ 0.21
COL5A1-201ENST00000371817 GPAA1O43292 621 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 PGM1P36871 562 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 C8orf58Q8NAV2 365 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 AP1M1Q9BXS5 423 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 TBCCQ15814 346 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 AOC3Q16853 763 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 PPP1R2P3Q6NXS1 205 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 LONP2Q86WA8 852 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 ZSCAN32Q9NX65 697 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 FTCDO95954 541 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 PIK3CAP42336 1068 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 TFAP4Q01664 338 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 TPH2Q8IWU9 490 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 FAM227BQ96M60 508 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 USP40Q9NVE5 1235 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 DLGAP2Q9P1A6 1054 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 RPRD2Q5VT52 1461 aaKnown RBP16.38■□□□□ 0.21
COL5A1-201ENST00000371817 M0R3G1 203 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 SEC24DO94855 1032 aaPredicted RBP16.38■□□□□ 0.21
COL5A1-201ENST00000371817 TMOD1P28289 359 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 RUNX1T1Q06455 604 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 DMC1Q14565 340 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 TAF1BQ53T94 588 aaPredicted RBP16.38■□□□□ 0.21
COL5A1-201ENST00000371817 ZNF274Q96GC6 653 aaPredicted RBP16.38■□□□□ 0.21
COL5A1-201ENST00000371817 PRPF18Q99633 342 aaKnown RBP16.38■□□□□ 0.21
COL5A1-201ENST00000371817 CYP4F11Q9HBI6 524 aa16.38■□□□□ 0.21
COL5A1-201ENST00000371817 KRT39Q6A163 491 aa16.37■□□□□ 0.21
COL5A1-201ENST00000371817 THEMISQ8N1K5 641 aaPredicted RBP16.37■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 551.1 ms