RNA–Protein interactions for RNA: ENST00000594806.5

TRIM28-204, Transcript of tripartite motif containing 28, humanhuman

TSL 5

Gene TRIM28, Length 861 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-204ENST00000594806 SENP7Q9BQF6 1050 aa29.41■■■□□ 2.3
TRIM28-204ENST00000594806 POLR3EQ9NVU0 708 aa29.41■■■□□ 2.3
TRIM28-204ENST00000594806 ELP1O95163 1332 aa29.41■■■□□ 2.3
TRIM28-204ENST00000594806 PDE4DIPQ5VU43 2346 aa29.4■■■□□ 2.3
TRIM28-204ENST00000594806 A0A1W2PQ45 241 aaPredicted RBP29.4■■■□□ 2.3
TRIM28-204ENST00000594806 A0A1W2PQY0 241 aa29.4■■■□□ 2.3
TRIM28-204ENST00000594806 A6NJR5 290 aa29.4■■■□□ 2.3
TRIM28-204ENST00000594806 JAK2O60674 1132 aa29.4■■■□□ 2.3
TRIM28-204ENST00000594806 ARHGAP1Q07960 439 aa29.4■■■□□ 2.3
TRIM28-204ENST00000594806 C1orf53Q5VUE5 145 aa29.4■■■□□ 2.3
TRIM28-204ENST00000594806 DHX37Q8IY37 1157 aaKnown RBP29.4■■■□□ 2.3
TRIM28-204ENST00000594806 CRYGNQ8WXF5 182 aa29.4■■■□□ 2.3
TRIM28-204ENST00000594806 COPS5Q92905 334 aa29.4■■■□□ 2.3
TRIM28-204ENST00000594806 JADE2Q9NQC1 790 aa29.4■■■□□ 2.3
TRIM28-204ENST00000594806 BEX3Q00994 111 aa29.39■■■□□ 2.3
TRIM28-204ENST00000594806 CEP55Q53EZ4 464 aa29.39■■■□□ 2.3
TRIM28-204ENST00000594806 CELF3Q5SZQ8 465 aaKnown RBP29.39■■■□□ 2.3
TRIM28-204ENST00000594806 NIPA1Q7RTP0 329 aa29.39■■■□□ 2.3
TRIM28-204ENST00000594806 TMX3Q96JJ7 454 aa29.39■■■□□ 2.3
TRIM28-204ENST00000594806 ZFP91Q96JP5 570 aaPredicted RBP29.39■■■□□ 2.3
TRIM28-204ENST00000594806 PGBD1Q96JS3 809 aa29.39■■■□□ 2.3
TRIM28-204ENST00000594806 MXRA8Q9BRK3 442 aa29.39■■■□□ 2.3
TRIM28-204ENST00000594806 SEZ6LQ9BYH1 1024 aa29.39■■■□□ 2.3
TRIM28-204ENST00000594806 M0R2N6 131 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 ITGB5P18084 799 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 MTMR1Q13613 665 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 TRIM29Q14134 588 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 NPY5RQ15761 445 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 MYSM1Q5VVJ2 828 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 SLC39A5Q6ZMH5 540 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 DPF3Q92784 378 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 BRMS1Q9HCU9 246 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 STARD7Q9NQZ5 370 aa29.38■■■□□ 2.29
TRIM28-204ENST00000594806 UBA1P22314 1058 aaKnown RBP29.37■■■□□ 2.29
TRIM28-204ENST00000594806 ZNF76P36508 570 aa29.37■■■□□ 2.29
TRIM28-204ENST00000594806 USP11P51784 963 aa29.37■■■□□ 2.29
TRIM28-204ENST00000594806 IRX5P78411 483 aaPredicted RBP29.37■■■□□ 2.29
TRIM28-204ENST00000594806 SNX17Q15036 470 aa29.37■■■□□ 2.29
TRIM28-204ENST00000594806 PPTC7Q8NI37 304 aa29.37■■■□□ 2.29
TRIM28-204ENST00000594806 RASGRP4Q8TDF6 673 aa29.37■■■□□ 2.29
TRIM28-204ENST00000594806 FERMT2Q96AC1 680 aa29.37■■■□□ 2.29
TRIM28-204ENST00000594806 KCNJ14Q9UNX9 436 aa29.37■■■□□ 2.29
TRIM28-204ENST00000594806 ADAMTS3O15072 1205 aa29.36■■■□□ 2.29
TRIM28-204ENST00000594806 CD2BP2O95400 341 aaKnown RBP29.36■■■□□ 2.29
TRIM28-204ENST00000594806 GGPS1O95749 300 aa29.36■■■□□ 2.29
TRIM28-204ENST00000594806 PTGS1P23219 599 aa29.36■■■□□ 2.29
TRIM28-204ENST00000594806 SP2Q02086 613 aa29.36■■■□□ 2.29
TRIM28-204ENST00000594806 SEMA3FQ13275 785 aa29.36■■■□□ 2.29
TRIM28-204ENST00000594806 KRT25Q7Z3Z0 450 aa29.36■■■□□ 2.29
TRIM28-204ENST00000594806 MLXIPQ9HAP2 919 aa29.36■■■□□ 2.29
TRIM28-204ENST00000594806 KIF3AQ9Y496 699 aa29.36■■■□□ 2.29
TRIM28-204ENST00000594806 MEIS1O00470 390 aa29.35■■■□□ 2.29
TRIM28-204ENST00000594806 EVI5O60447 810 aa29.35■■■□□ 2.29
TRIM28-204ENST00000594806 CIITAP33076 1130 aa29.35■■■□□ 2.29
TRIM28-204ENST00000594806 METTL7BQ6UX53 244 aa29.35■■■□□ 2.29
TRIM28-204ENST00000594806 AFG1LQ8WV93 481 aa29.35■■■□□ 2.29
TRIM28-204ENST00000594806 NR2E3Q9Y5X4 410 aa29.35■■■□□ 2.29
TRIM28-204ENST00000594806 ALPK3Q96L96 1907 aa29.35■■■□□ 2.29
TRIM28-204ENST00000594806 MMP3P08254 477 aa29.34■■■□□ 2.29
TRIM28-204ENST00000594806 DGKDQ16760 1214 aa29.34■■■□□ 2.29
TRIM28-204ENST00000594806 LRRC26Q2I0M4 334 aa29.34■■■□□ 2.29
TRIM28-204ENST00000594806 CXCL17Q6UXB2 119 aa29.34■■■□□ 2.29
TRIM28-204ENST00000594806 FAM184AQ8NB25 1140 aa29.34■■■□□ 2.29
TRIM28-204ENST00000594806 VTI1AQ96AJ9 217 aa29.34■■■□□ 2.29
TRIM28-204ENST00000594806 A0A0U1RQG5 324 aaPredicted RBP29.33■■■□□ 2.29
TRIM28-204ENST00000594806 PPFIA4O75335 1185 aa29.33■■■□□ 2.29
TRIM28-204ENST00000594806 KRT2P35908 639 aa29.33■■■□□ 2.29
TRIM28-204ENST00000594806 ATN1P54259 1190 aaPredicted RBP29.33■■■□□ 2.29
TRIM28-204ENST00000594806 PURAQ00577 322 aaKnown RBP29.33■■■□□ 2.29
TRIM28-204ENST00000594806 NONOQ15233 471 aaKnown RBP eCLIP29.33■■■□□ 2.29
TRIM28-204ENST00000594806 SPATA33Q96N06 139 aa29.33■■■□□ 2.29
TRIM28-204ENST00000594806 MTG1Q9BT17 334 aaPredicted RBP29.33■■■□□ 2.29
TRIM28-204ENST00000594806 KCNH7Q9NS40 1196 aa29.33■■■□□ 2.29
TRIM28-204ENST00000594806 MROH7Q68CQ1 1323 aa29.32■■■□□ 2.28
TRIM28-204ENST00000594806 CCDC194A0A1B0GVG4 234 aa29.32■■■□□ 2.28
TRIM28-204ENST00000594806 DTNBO60941 627 aa29.32■■■□□ 2.28
TRIM28-204ENST00000594806 MMP1P03956 469 aa29.32■■■□□ 2.28
TRIM28-204ENST00000594806 HOXD8P13378 290 aaPredicted RBP29.32■■■□□ 2.28
TRIM28-204ENST00000594806 SETQ01105 290 aaPredicted RBP29.32■■■□□ 2.28
TRIM28-204ENST00000594806 KRT40Q6A162 431 aa29.32■■■□□ 2.28
TRIM28-204ENST00000594806 MKI67P46013 3256 aaKnown RBP29.32■■■□□ 2.28
TRIM28-204ENST00000594806 MYL3P08590 195 aa29.31■■■□□ 2.28
TRIM28-204ENST00000594806 KCNA2P16389 499 aa29.31■■■□□ 2.28
TRIM28-204ENST00000594806 TBCKQ8TEA7 893 aa29.31■■■□□ 2.28
TRIM28-204ENST00000594806 C8orf76Q96K31 380 aa29.31■■■□□ 2.28
TRIM28-204ENST00000594806 GJB4Q9NTQ9 266 aa29.31■■■□□ 2.28
TRIM28-204ENST00000594806 ZSCAN21Q9Y5A6 473 aaPredicted RBP29.31■■■□□ 2.28
TRIM28-204ENST00000594806 NFASCO94856 1347 aa29.3■■■□□ 2.28
TRIM28-204ENST00000594806 RTP1P59025 263 aa29.3■■■□□ 2.28
TRIM28-204ENST00000594806 SAFBQ15424 915 aaKnown RBP eCLIP29.3■■■□□ 2.28
TRIM28-204ENST00000594806 MOXD1Q6UVY6 613 aa29.3■■■□□ 2.28
TRIM28-204ENST00000594806 CYFIP1Q7L576 1253 aa29.3■■■□□ 2.28
TRIM28-204ENST00000594806 PLA2G4DQ86XP0 818 aa29.3■■■□□ 2.28
TRIM28-204ENST00000594806 CYP2W1Q8TAV3 490 aa29.3■■■□□ 2.28
TRIM28-204ENST00000594806 TOX2Q96NM4 488 aa29.3■■■□□ 2.28
TRIM28-204ENST00000594806 SCN10AQ9Y5Y9 1956 aa29.3■■■□□ 2.28
TRIM28-204ENST00000594806 IGLV3-22A0A075B6J6 115 aa29.29■■■□□ 2.28
TRIM28-204ENST00000594806 FAM86B1E9PN63 330 aa29.29■■■□□ 2.28
TRIM28-204ENST00000594806 ARVCFO00192 962 aa29.29■■■□□ 2.28
TRIM28-204ENST00000594806 NOP56O00567 594 aaKnown RBP29.29■■■□□ 2.28
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms