RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 LIMCH1Q9UPQ0 1083 aa14.85□□□□□ -0.03
CLK3-224ENST00000568605 A6NJR5 290 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 PPFIA3O75145 1194 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 MYL3P08590 195 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 UBA1P22314 1058 aaKnown RBP14.84□□□□□ -0.03
CLK3-224ENST00000568605 ICAM3P32942 547 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 SREBF1P36956 1147 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 CLK2P49760 499 aaKnown RBP14.84□□□□□ -0.03
CLK3-224ENST00000568605 NLRP5P59047 1200 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 ARHGAP1Q07960 439 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 LY6KQ17RY6 165 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 TRIM60Q495X7 471 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 CXCL17Q6UXB2 119 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 COPS5Q92905 334 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 ZSCAN31Q96LW9 406 aaPredicted RBP14.84□□□□□ -0.03
CLK3-224ENST00000568605 MTG1Q9BT17 334 aaPredicted RBP14.84□□□□□ -0.03
CLK3-224ENST00000568605 SH2B1Q9NRF2 756 aaPredicted RBP14.84□□□□□ -0.03
CLK3-224ENST00000568605 DNAH12Q6ZR08 3092 aa14.84□□□□□ -0.03
CLK3-224ENST00000568605 NOP56O00567 594 aaKnown RBP14.83□□□□□ -0.04
CLK3-224ENST00000568605 TLR3O15455 904 aaKnown RBP14.83□□□□□ -0.04
CLK3-224ENST00000568605 RGS20O76081 388 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 GGPS1O95749 300 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 MMP3P08254 477 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 ZNF76P36508 570 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 MTMR1Q13613 665 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 DGKDQ16760 1214 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 TMEM63BQ5T3F8 832 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 JAKMIP3Q5VZ66 844 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 PPTC7Q8NI37 304 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 PGBD1Q96JS3 809 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 TBC1D32Q96NH3 1257 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 KIF2CQ99661 725 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 KATNAL1Q9BW62 490 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 MLXIPQ9HAP2 919 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 RTEL1Q9NZ71 1219 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 ORC3Q9UBD5 711 aaPredicted RBP14.83□□□□□ -0.04
CLK3-224ENST00000568605 PCDHA4Q9UN74 947 aa14.83□□□□□ -0.04
CLK3-224ENST00000568605 DCDC2CA8MYV0 355 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 H0YGN5 161 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 MAFGO15525 162 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 PQBP1O60828 265 aaKnown RBP14.82□□□□□ -0.04
CLK3-224ENST00000568605 LARGE1O95461 756 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 PTGS1P23219 599 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 IRX5P78411 483 aaPredicted RBP14.82□□□□□ -0.04
CLK3-224ENST00000568605 PURAQ00577 322 aaKnown RBP14.82□□□□□ -0.04
CLK3-224ENST00000568605 SETQ01105 290 aaPredicted RBP14.82□□□□□ -0.04
CLK3-224ENST00000568605 CELF3Q5SZQ8 465 aaKnown RBP14.82□□□□□ -0.04
CLK3-224ENST00000568605 METTL7BQ6UX53 244 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 NECAB1Q8N987 351 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 DAGLBQ8NCG7 672 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 AFG1LQ8WV93 481 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 SENP7Q9BQF6 1050 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 BRMS1Q9HCU9 246 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 TMEM260Q9NX78 707 aa14.82□□□□□ -0.04
CLK3-224ENST00000568605 SPATA31C2B4DYI2 1134 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 ARVCFO00192 962 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 CLTBP09497 229 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 MCM2P49736 904 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 ARHGAP4P98171 946 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 ITGA7Q13683 1181 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 TRIM29Q14134 588 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 MYSM1Q5VVJ2 828 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 ANKRD33Q7Z3H0 272 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 BLIDQ8IZY5 108 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 NSUN7Q8NE18 718 aaKnown RBP14.81□□□□□ -0.04
CLK3-224ENST00000568605 ZFP91Q96JP5 570 aaPredicted RBP14.81□□□□□ -0.04
CLK3-224ENST00000568605 SPATA33Q96N06 139 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 TOX2Q96NM4 488 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 BACH2Q9BYV9 841 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 JADE2Q9NQC1 790 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 PRDM5Q9NQX1 630 aaPredicted RBP14.81□□□□□ -0.04
CLK3-224ENST00000568605 UBIAD1Q9Y5Z9 338 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 LOXHD1Q8IVV2 1947 aa14.81□□□□□ -0.04
CLK3-224ENST00000568605 SCN5AQ14524 2016 aa14.8□□□□□ -0.04
CLK3-224ENST00000568605 HMGN5P82970 282 aaKnown RBP14.8□□□□□ -0.04
CLK3-224ENST00000568605 TLE2Q04725 743 aa14.8□□□□□ -0.04
CLK3-224ENST00000568605 CEP55Q53EZ4 464 aa14.8□□□□□ -0.04
CLK3-224ENST00000568605 NIPA1Q7RTP0 329 aa14.8□□□□□ -0.04
CLK3-224ENST00000568605 LBHD1Q9BQE6 289 aaPredicted RBP14.8□□□□□ -0.04
CLK3-224ENST00000568605 MXRA8Q9BRK3 442 aa14.8□□□□□ -0.04
CLK3-224ENST00000568605 SDF4Q9BRK5 362 aa14.8□□□□□ -0.04
CLK3-224ENST00000568605 LLPHQ9BRT6 129 aaKnown RBP14.8□□□□□ -0.04
CLK3-224ENST00000568605 ALG1Q9BT22 464 aa14.8□□□□□ -0.04
CLK3-224ENST00000568605 TCEAL9Q9UHQ7 104 aa14.8□□□□□ -0.04
CLK3-224ENST00000568605 ZMYND8Q9ULU4 1186 aaPredicted RBP14.8□□□□□ -0.04
CLK3-224ENST00000568605 PPFIA4O75335 1185 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 CTDNEP1O95476 244 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 CYP3A4P08684 503 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 ITGB5P18084 799 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 PTPN11Q06124 597 aaPredicted RBP14.79□□□□□ -0.04
CLK3-224ENST00000568605 SEMA3FQ13275 785 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 FAM47CQ5HY64 1035 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 NFRKBQ6P4R8 1299 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 CYFIP1Q7L576 1253 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 KRT25Q7Z3Z0 450 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 CCDC83Q8IWF9 413 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 RASGRP4Q8TDF6 673 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 AIFM3Q96NN9 605 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 PHF20Q9BVI0 1012 aa14.79□□□□□ -0.04
CLK3-224ENST00000568605 PDLIM7Q9NR12 457 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 199.6 ms