RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 CALML4Q96GE6 196 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 TRIM9Q9C026 710 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 NOD2Q9HC29 1040 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 PLCB1Q9NQ66 1216 aa14.11□□□□□ -0.15
SFSWAP-209ENST00000540469 DDAH1O94760 285 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 KLRC1P26715 233 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 PPP1R2P41236 205 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 POLR2FP61218 127 aaKnown RBP14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 FAM133BQ5BKY9 247 aaKnown RBP14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 ARMC9Q7Z3E5 817 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 TSG101Q99816 390 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 ATP6V0A4Q9HBG4 840 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 BCL9LQ86UU0 1499 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 MRPL12P52815 198 aaKnown RBP14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 ERVK-9P63128 1117 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 MTMR3Q13615 1198 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 NBPF9Q3BBW0 867 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 ZCRB1Q8TBF4 217 aaKnown RBP14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 MICAL1Q8TDZ2 1067 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 DDX47Q9H0S4 455 aaKnown RBP14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 KBTBD4Q9NVX7 518 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 SLAIN2Q9P270 581 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 ADAMTS1Q9UHI8 967 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 VIMP08670 466 aaKnown RBP14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 ZNF844Q08AG5 666 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 HLFQ16534 295 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 PFKFB3Q16875 520 aaPredicted RBP14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 PDXDC1Q6P996 788 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 TAX1BP1Q86VP1 789 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 DNAJC10Q8IXB1 793 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 MDM1Q8TC05 714 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 GOLPH3Q9H4A6 298 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 SAMD15Q9P1V8 674 aa14.1□□□□□ -0.15
SFSWAP-209ENST00000540469 FAM205AQ6ZU69 1335 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 PNPLA7Q6ZV29 1317 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 A0A0G2JS52 829 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 GRID2IPA4D2P6 1211 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 DHX9Q08211 1270 aaKnown RBP14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 KLHL30Q0D2K2 578 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 LRIG3Q6UXM1 1119 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 CADPS2Q86UW7 1296 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 NSMCE1Q8WV22 266 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 SPDL1Q96EA4 605 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 PLA2G12BQ9BX93 195 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 KRIT1O00522 736 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 CUL1Q13616 776 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 TXNRD1Q16881 649 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 ACCSLQ4AC99 568 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 NLRP10Q86W26 655 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 FAM228AQ86W67 206 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 STAG2Q8N3U4 1231 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 VGLL2Q8N8G2 317 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 USP38Q8NB14 1042 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 STAMBPL1Q96FJ0 436 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 LSM14BQ9BX40 385 aaKnown RBP14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 ISCUQ9H1K1 167 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 MROH5Q6ZUA9 1318 aa14.09□□□□□ -0.15
SFSWAP-209ENST00000540469 USP17L12C9JPN9 530 aa14.08□□□□□ -0.15
SFSWAP-209ENST00000540469 USP17L21D6R901 530 aa14.08□□□□□ -0.15
SFSWAP-209ENST00000540469 TECP42680 631 aa14.08□□□□□ -0.15
SFSWAP-209ENST00000540469 DYNLL1P63167 89 aaKnown RBP14.08□□□□□ -0.15
SFSWAP-209ENST00000540469 CHMP6Q96FZ7 201 aa14.08□□□□□ -0.15
SFSWAP-209ENST00000540469 PCDHA4Q9UN74 947 aa14.08□□□□□ -0.15
SFSWAP-209ENST00000540469 WDR3Q9UNX4 943 aaKnown RBP eCLIP14.08□□□□□ -0.15
SFSWAP-209ENST00000540469 SIK3Q9Y2K2 1263 aa14.08□□□□□ -0.15
SFSWAP-209ENST00000540469 ATP8A1Q9Y2Q0 1164 aa14.08□□□□□ -0.15
SFSWAP-209ENST00000540469 DAPK3O43293 454 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 CCNT1O60563 726 aaKnown RBP14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 PDE8AO60658 829 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 TRIM37O94972 964 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 ATP6V1G2O95670 118 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 HNRNPH3P31942 346 aaKnown RBP14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 PRPF4BQ13523 1007 aaKnown RBP14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 LRRC41Q15345 812 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 ZSCAN29Q8IWY8 852 aaPredicted RBP14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 CUL5Q93034 780 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 PSMD1Q99460 953 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 SEMA6BQ9H3T3 888 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 TRAF5O00463 557 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 PJA2O43164 708 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 SV2BQ7L1I2 683 aa14.08□□□□□ -0.16
SFSWAP-209ENST00000540469 STARD3NLO95772 234 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 TRIM28Q13263 835 aaKnown RBP14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 GIGYF2Q6Y7W6 1299 aaKnown RBP14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 FAXDC2Q96IV6 333 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 CCSER1Q9C0I3 900 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 CNOT8Q9UFF9 292 aaKnown RBP14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 SCN11AQ9UI33 1791 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 DDX60Q8IY21 1712 aaKnown RBP14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 SSU72P8A0A1W2PR75 194 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 SRRM3A6NNA2 597 aaPredicted RBP14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 SART1O43290 800 aaKnown RBP14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 SERPING1P05155 500 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 ELF3P78545 371 aaPredicted RBP14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 ZKSCAN8Q15776 578 aaPredicted RBP14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 FAM133AQ8N9E0 248 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 C3orf20Q8ND61 904 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 DYDC1Q8WWB3 177 aa14.07□□□□□ -0.16
SFSWAP-209ENST00000540469 TATDN2Q93075 761 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms