RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 PDE6BP35913 854 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 STAT3P40763 770 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 GALK1P51570 392 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 LACTBP83111 547 aaPredicted RBP4.78□□□□□ -1.64
HMGB1-201ENST00000326004 SLC9A5Q14940 896 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 CRY1Q16526 586 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 CFAP100Q494V2 611 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 EMC4Q5J8M3 183 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 HABP4Q5JVS0 413 aaKnown RBP4.78□□□□□ -1.64
HMGB1-201ENST00000326004 KIF18BQ86Y91 864 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 PHOSPHO1Q8TCT1 267 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 CHAC2Q8WUX2 184 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 FAM168AQ92567 244 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 PEX11GQ96HA9 241 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 WNK4Q96J92 1243 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 KCNJ15Q99712 375 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 CAAP1Q9H8G2 361 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 CATSPERZQ9NTU4 200 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 IFT57Q9NWB7 429 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 FAM53CQ9NYF3 392 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 ZNF652Q9Y2D9 606 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 COQ6Q9Y2Z9 468 aa4.78□□□□□ -1.64
HMGB1-201ENST00000326004 FAM83GA6ND36 823 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 HGSO14964 777 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-201ENST00000326004 MAPKAPK2P49137 400 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 DNM2P50570 870 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 NEK4P51957 841 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 YBX1P67809 324 aaKnown RBP4.77□□□□□ -1.65
HMGB1-201ENST00000326004 RAB3GAP1Q15042 981 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 GPR19Q15760 415 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 TMEM177Q53S58 311 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 PIK3R6Q5UE93 754 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 STEAP3Q658P3 488 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 CDCA2Q69YH5 1023 aaPredicted RBP4.77□□□□□ -1.65
HMGB1-201ENST00000326004 ABHD17CQ6PCB6 329 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 IGSF22Q8N9C0 903 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 UHMK1Q8TAS1 419 aaKnown RBP4.77□□□□□ -1.65
HMGB1-201ENST00000326004 ZCRB1Q8TBF4 217 aaKnown RBP4.77□□□□□ -1.65
HMGB1-201ENST00000326004 TSPAN17Q96FV3 270 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 BRINP2Q9C0B6 783 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 SMOC1Q9H4F8 434 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 CABP5Q9NP86 173 aa4.77□□□□□ -1.65
HMGB1-201ENST00000326004 DBR1Q9UK59 544 aaKnown RBP4.77□□□□□ -1.65
HMGB1-201ENST00000326004 ZC3H12DA2A288 527 aaKnown RBP4.76□□□□□ -1.65
HMGB1-201ENST00000326004 NUDT19A8MXV4 375 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 F8W031 263 aaPredicted RBP4.76□□□□□ -1.65
HMGB1-201ENST00000326004 ZNF561-AS1K7EIQ3 104 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 M0R2C6 588 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 CBX4O00257 560 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 KPNA6O60684 536 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 TADA3O75528 432 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 GLRX3O76003 335 aaKnown RBP4.76□□□□□ -1.65
HMGB1-201ENST00000326004 ARHGAP44Q17R89 818 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 ZC3H14Q6PJT7 736 aaKnown RBP4.76□□□□□ -1.65
HMGB1-201ENST00000326004 MPZL3Q6UWV2 235 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 RPTNQ6XPR3 784 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 OVCH1Q7RTY7 1134 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 RNF180Q86T96 592 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 NLGN4XQ8N0W4 816 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 CHST14Q8NCH0 376 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 PIP4K2CQ8TBX8 421 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 MTFR1LQ9H019 292 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 ZNF552Q9H707 407 aaPredicted RBP4.76□□□□□ -1.65
HMGB1-201ENST00000326004 KLHL14Q9P2G3 628 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 DSEQ9UL01 958 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 CBLCQ9ULV8 474 aa4.76□□□□□ -1.65
HMGB1-201ENST00000326004 ZNF503-AS2A6NEH8 195 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 IQCJ-SCHIP1C9J366 451 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-201ENST00000326004 SGSM2O43147 1006 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 COL6A2P12110 1019 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 PDE6AP16499 860 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 IBSPP21815 317 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-201ENST00000326004 CNGA1P29973 690 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 MECP2P51608 486 aaKnown RBP4.75□□□□□ -1.65
HMGB1-201ENST00000326004 PTPROQ16827 1216 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 PLEKHN1Q494U1 663 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-201ENST00000326004 FIGNQ5HY92 759 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 CT47A1Q5JQC4 288 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-201ENST00000326004 PKN3Q6P5Z2 889 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 HHIPL2Q6UWX4 724 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 ARHGAP36Q6ZRI8 547 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 EP400NLQ6ZTU2 488 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 DDX46Q7L014 1031 aaKnown RBP4.75□□□□□ -1.65
HMGB1-201ENST00000326004 OTOP1Q7RTM1 612 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 TRIM48Q8IWZ4 208 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 CISD2Q8N5K1 135 aaKnown RBP4.75□□□□□ -1.65
HMGB1-201ENST00000326004 C2orf69Q8N8R5 385 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 PDGFDQ9GZP0 370 aaPredicted RBP4.75□□□□□ -1.65
HMGB1-201ENST00000326004 MYOTQ9UBF9 498 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 B4GALT6Q9UBX8 382 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 PALD1Q9ULE6 856 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 SRPK3Q9UPE1 567 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 PCDHB4Q9Y5E5 795 aa4.75□□□□□ -1.65
HMGB1-201ENST00000326004 CARMIL2Q6F5E8 1435 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 SLC12A8A0AV02 714 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 NKRFO15226 690 aaKnown RBP eCLIP4.74□□□□□ -1.651e-9■□□□□ 9.2
HMGB1-201ENST00000326004 PEX10O60683 326 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 GAS7O60861 476 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 AMY2AP04746 511 aa4.74□□□□□ -1.65
HMGB1-201ENST00000326004 CPEP16870 476 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms