RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 PHBP35232 272 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 PFKFB3Q16875 520 aaPredicted RBP21.02■□□□□ 0.96
USP48-201ENST00000308271 PRR16Q569H4 304 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 DCUN1D2Q6PH85 259 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 PROM2Q8N271 834 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 ESYT3A0FGR9 886 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 SMIM24O75264 130 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 MESDQ14696 234 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 KCNB1Q14721 858 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP21.02■□□□□ 0.961e-6■■■■■ 32.8
USP48-201ENST00000308271 EMILIN3Q9NT22 766 aa21.02■□□□□ 0.96
USP48-201ENST00000308271 LARSQ9P2J5 1176 aaKnown RBP21.02■□□□□ 0.96
USP48-201ENST00000308271 MMEP08473 750 aa21.02■□□□□ 0.95
USP48-201ENST00000308271 RNASELQ05823 741 aaKnown RBP21.02■□□□□ 0.95
USP48-201ENST00000308271 PPP1R21Q6ZMI0 780 aa21.02■□□□□ 0.95
USP48-201ENST00000308271 TBC1D22AQ8WUA7 517 aa21.02■□□□□ 0.95
USP48-201ENST00000308271 TRIM6Q9C030 488 aaPredicted RBP21.02■□□□□ 0.95
USP48-201ENST00000308271 PDE6CP51160 858 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 TAF11Q15544 211 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 ATG9AQ7Z3C6 839 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 HVCN1Q96D96 273 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 BRIP1Q9BX63 1249 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 EDEM3Q9BZQ6 932 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 EPN3Q9H201 632 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 GYPCP04921 128 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 WDR93Q6P2C0 686 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 PPP4R3CPQ6ZMV5 832 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 RIN2Q8WYP3 895 aaPredicted RBP21.01■□□□□ 0.95
USP48-201ENST00000308271 ELAC2Q9BQ52 826 aaKnown RBP21.01■□□□□ 0.95
USP48-201ENST00000308271 SUGCTQ9HAC7 445 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 FRMPD2Q68DX3 1309 aaPredicted RBP21.01■□□□□ 0.95
USP48-201ENST00000308271 PVALEFA0A1B0GWK0 134 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 DGKHQ86XP1 1220 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 CDCA7Q9BWT1 371 aaPredicted RBP21.01■□□□□ 0.95
USP48-201ENST00000308271 ANAPC4Q9UJX5 808 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 GGA1Q9UJY5 639 aa21.01■□□□□ 0.95
USP48-201ENST00000308271 CHGBP05060 677 aa21■□□□□ 0.95
USP48-201ENST00000308271 SLCO1A2P46721 670 aa21■□□□□ 0.95
USP48-201ENST00000308271 DPYDQ12882 1025 aa21■□□□□ 0.95
USP48-201ENST00000308271 MAEAQ7L5Y9 396 aa21■□□□□ 0.95
USP48-201ENST00000308271 PARP9Q8IXQ6 854 aa21■□□□□ 0.95
USP48-201ENST00000308271 PKD2L1Q9P0L9 805 aa21■□□□□ 0.95
USP48-201ENST00000308271 DIS3Q9Y2L1 958 aaKnown RBP21■□□□□ 0.95
USP48-201ENST00000308271 ECEL1O95672 775 aa21■□□□□ 0.95
USP48-201ENST00000308271 HSPA1LP34931 641 aa21■□□□□ 0.95
USP48-201ENST00000308271 MAGOHP61326 146 aaKnown RBP21■□□□□ 0.95
USP48-201ENST00000308271 PNKPQ96T60 521 aa21■□□□□ 0.95
USP48-201ENST00000308271 KCND1Q9NSA2 647 aa21■□□□□ 0.95
USP48-201ENST00000308271 PTPN22Q9Y2R2 807 aa21■□□□□ 0.95
USP48-201ENST00000308271 FOXO4P98177 505 aa21■□□□□ 0.95
USP48-201ENST00000308271 ACTN3Q08043 901 aaPredicted RBP21■□□□□ 0.95
USP48-201ENST00000308271 MIPOL1Q8TD10 442 aa21■□□□□ 0.95
USP48-201ENST00000308271 FAM170AA1A519 330 aa21■□□□□ 0.95
USP48-201ENST00000308271 PSMC2P35998 433 aaKnown RBP21■□□□□ 0.95
USP48-201ENST00000308271 SESN3P58005 492 aa21■□□□□ 0.95
USP48-201ENST00000308271 GFPT1Q06210 699 aaPredicted RBP21■□□□□ 0.95
USP48-201ENST00000308271 RSRC2Q7L4I2 434 aaKnown RBP21■□□□□ 0.95
USP48-201ENST00000308271 PPRC1Q5VV67 1664 aaKnown RBP21■□□□□ 0.95
USP48-201ENST00000308271 CYP2D7A0A087X1C5 515 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 NCK2O43639 380 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 IL6STP40189 918 aaPredicted RBP20.99■□□□□ 0.95
USP48-201ENST00000308271 GUCY1A3Q02108 690 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 SDCCAG8Q86SQ7 713 aaPredicted RBP20.99■□□□□ 0.95
USP48-201ENST00000308271 FGGP02679 453 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 IRX4P78413 519 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 STRN3Q13033 797 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 MAP7D1Q3KQU3 841 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 FBXW10Q5XX13 1052 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 IFNB1P01574 187 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 MDH1P40925 334 aaKnown RBP20.99■□□□□ 0.95
USP48-201ENST00000308271 MAP7Q14244 749 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 FAM186BQ8IYM0 893 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 ENAHQ8N8S7 591 aaPredicted RBP20.99■□□□□ 0.95
USP48-201ENST00000308271 CCDC89Q8N998 374 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 GUCY1A2P33402 732 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 CCDC14Q49A88 953 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 TRIM4Q9C037 500 aa20.99■□□□□ 0.95
USP48-201ENST00000308271 UTYO14607 1347 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 GAS7O60861 476 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 GFPT2O94808 682 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 USH1GQ495M9 461 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 ASPRV1Q53RT3 343 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 RASIP1Q5U651 963 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 ZC3H13Q5T200 1668 aaKnown RBP20.98■□□□□ 0.95
USP48-201ENST00000308271 TXNDC9O14530 226 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 RIMBP2O15034 1052 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 NCAPHQ15003 741 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 CNBD1Q8NA66 436 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 ZNF622Q969S3 477 aaKnown RBP eCLIP20.98■□□□□ 0.952e-9■■□□□ 13.8
USP48-201ENST00000308271 FAM212AQ96EL1 285 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 GCNT4Q9P109 453 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 PODXLO00592 558 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 KIF3CO14782 793 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 ZNF185O15231 689 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 ANTXR2P58335 489 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 ITIH3Q06033 890 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 ST3GAL1Q11201 340 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 FAM83BQ5T0W9 1011 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 NUGGCQ68CJ6 796 aa20.98■□□□□ 0.95
USP48-201ENST00000308271 PALM2Q8IXS6 379 aa20.98■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms