RNA–Protein interactions for RNA: YFL009W

CDC4, Transcript of F-box protein required for both the G1/S and G2/M phase transitions, yeast

Gene CDC4, Length 2,340 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC4	YFL009W	YPL107W	Q02873	248 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	EAR1	Q03212	550 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	DOT1	Q04089	582 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	HPF1	Q05164	967 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	THI7	Q05998	598 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	DUS4	Q06063	367 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	CUE5	Q08412	411 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	NSL1	Q12143	216 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	SEC53	P07283	254 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	HOM2	P13663	365 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	UGA1	P17649	471 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	SNF5	P18480	905 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	KRR1	P25586	316 aa	Predicted RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	UBC8	P28263	218 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	CBR1	P38626	284 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	LEU5	P38702	357 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	NDT80	P38830	627 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	DUN1	P39009	513 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	RPN3	P40016	523 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	NDE1	P40215	560 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	YFL012W	P43580	148 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	CPR7	P47103	393 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	PYK2	P52489	506 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	NOP13	P53883	403 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
CDC4	YFL009W	YNL095C	P53932	642 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	SNU56	Q03782	492 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	DUS3	Q06053	668 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	KAP95	Q06142	861 aa	Known RBP	4.88	□□□□□ -1.63
CDC4	YFL009W	GRS2	Q06817	618 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	GAS5	Q08193	484 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	MLH3	Q12083	715 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	ATP14	Q12349	124 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	RPN6	Q12377	434 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	KCS1	Q12494	1050 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	SET6	Q12529	373 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	RGS2	Q99188	309 aa		4.88	□□□□□ -1.63
CDC4	YFL009W	RIF1	P29539	1916 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	TUB2	P02557	457 aa	Known RBP	4.87	□□□□□ -1.63
CDC4	YFL009W	GAL1	P04385	528 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	SRD1	P09007	221 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	IMA3	P0CW40	589 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	IMA4	P0CW41	589 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	RPL3	P14126	387 aa	Known RBP	4.87	□□□□□ -1.63
CDC4	YFL009W	MRPL8	P22353	238 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	HYM1	P32464	399 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	TMT1	P32643	299 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	SKG6	P32900	734 aa	Predicted RBP	4.87	□□□□□ -1.63
CDC4	YFL009W	SKG1	P36169	355 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	IPI1	P38803	334 aa	Predicted RBP	4.87	□□□□□ -1.63
CDC4	YFL009W	CYC2	P38909	366 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	YAT2	P40017	923 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	TPA1	P40032	644 aa	Known RBP	4.87	□□□□□ -1.63
CDC4	YFL009W	YIL054W	P40524	105 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	GYP8	P43570	497 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	YNL033W	P53964	284 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	YNL019C	P53975	284 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	GPD1	Q00055	391 aa	Known RBP	4.87	□□□□□ -1.63
CDC4	YFL009W	ECM9	Q02202	377 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	REC102	Q02721	264 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	HSP31	Q04432	237 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	APC4	Q04601	652 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	YMR074C	Q04773	145 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	SPO77	Q06134	477 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	VPS74	Q06385	345 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	ARV1	Q06541	321 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	RSC58	Q07979	502 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	IMA2	Q08295	589 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	LAP2	Q10740	671 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	CMC2	Q3E7A4	109 aa		4.87	□□□□□ -1.63
CDC4	YFL009W	MET16	P18408	261 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC4	YFL009W	SAM2	P19358	384 aa	Known RBP	4.86	□□□□□ -1.63
CDC4	YFL009W	NFS1	P25374	497 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	AEP1	P32493	518 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	SPC34	P36131	295 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	GPT2	P36148	743 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	GPX2	P38143	162 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	YBR137W	P38276	179 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	ARN1	P38731	627 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	YHK8	P38776	514 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	SOP4	P39543	234 aa	Predicted RBP	4.86	□□□□□ -1.63
CDC4	YFL009W	TOK1	P40310	691 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	YKE4	P40544	346 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	GUF1	P46943	645 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	CCT8	P47079	568 aa	Known RBP	4.86	□□□□□ -1.63
CDC4	YFL009W	LSB1	P53281	241 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	CPR8	P53728	308 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	YNL010W	P53981	241 aa	Known RBP	4.86	□□□□□ -1.63
CDC4	YFL009W	VPS9	P54787	451 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	SVL3	Q03088	825 aa	Known RBP	4.86	□□□□□ -1.63
CDC4	YFL009W	YMR010W	Q03687	405 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	NEJ1	Q06148	342 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	CRN1	Q06440	651 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	RRP12	Q12754	1228 aa	Known RBP	4.86	□□□□□ -1.63
CDC4	YFL009W	YOR019W	Q99248	730 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	RPL25	P04456	142 aa	Known RBP	4.86	□□□□□ -1.63
CDC4	YFL009W	RHO2	P06781	192 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	PET54	P10834	293 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	YCK1	P23291	538 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	PRE8	P23639	250 aa		4.86	□□□□□ -1.63
CDC4	YFL009W	PHA2	P32452	334 aa		4.86	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 60.8 ms