RNA–Protein interactions for RNA: ENST00000416651.5

NIF3L1-206, Transcript of NGG1 interacting factor 3 like 1, human

TSL 2 BASIC

Gene NIF3L1, Length 967 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NIF3L1-206	ENST00000416651	CHMP4C	Q96CF2	233 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	FTO	Q9C0B1	505 aa	Known RBP eCLIP	10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	KCNH6	Q9H252	994 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	ARHGEF10L	Q9HCE6	1279 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	DCP1A	Q9NPI6	582 aa	Predicted RBP	10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	HOMER2	Q9NSB8	354 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	SMC4	Q9NTJ3	1288 aa		10.46	□□□□□ -0.73
NIF3L1-206	ENST00000416651	BAZ2A	Q9UIF9	1905 aa	Known RBP	10.46	□□□□□ -0.74
NIF3L1-206	ENST00000416651	MYH8	P13535	1937 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	KMT2E	Q8IZD2	1858 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	KDM4A	O75164	1064 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	LTBR	P36941	435 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	VCP	P55072	806 aa	Known RBP	10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	ERVK-21	P61565	698 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	DLX2	Q07687	328 aa	Predicted RBP	10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CCDC158	Q5M9N0	1113 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	PHOSPHO2	Q8TCD6	241 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	TEX13B	Q9BXU2	312 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	MYO15A	Q9UKN7	3530 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	DCHS1	Q96JQ0	3298 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	LCT	P09848	1927 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	ATG2A	Q2TAZ0	1938 aa		10.45	□□□□□ -0.74
NIF3L1-206	ENST00000416651	TANC1	Q9C0D5	1861 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	SI	P14410	1827 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CACNA1H	O95180	2353 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	MAGEB6P1	A0A0J9YX57	407 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	FAM181B	A6NEQ2	426 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CDK8	P49336	464 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	MMP16	P51512	607 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	TCEAL5	Q5H9L2	206 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	ASCL5	Q7RTU5	278 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	STK11IP	Q8N1F8	1099 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	ANKRD35	Q8N283	1001 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	FAM133A	Q8N9E0	248 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	EAF2	Q96CJ1	260 aa	Predicted RBP	10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CTAGE1	Q96RT6	745 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	SLF1	Q9BQI6	1058 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	REPIN1	Q9BWE0	567 aa	Known RBP	10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	LMCD1	Q9NZU5	365 aa		10.44	□□□□□ -0.74
NIF3L1-206	ENST00000416651	KIF28P	B7ZC32	967 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CABYR	O75952	493 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	MYL3	P08590	195 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	ACTN1	P12814	892 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	GTF2F1	P35269	517 aa	Known RBP eCLIP	10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	SNAP25	P60880	206 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	NBPF20	Q3BBV1	942 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	FAM47C	Q5HY64	1035 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	RNF135	Q8IUD6	432 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	MFSD14A	Q96MC6	490 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	AP5M1	Q9H0R1	490 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	ARMT1	Q9H993	441 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651	DMD	P11532	3685 aa		10.43	□□□□□ -0.74
NIF3L1-206	ENST00000416651		E9PSI1	815 aa		10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	NBN	O60934	754 aa		10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	BCAR3	O75815	825 aa		10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	NDUFB10	O96000	172 aa		10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	PFKM	P08237	780 aa		10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	PDE6A	P16499	860 aa		10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	PURA	Q00577	322 aa	Known RBP	10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	LIN28B	Q6ZN17	250 aa	Known RBP eCLIP	10.42	□□□□□ -0.74	6e-6	■■■□□ 19.1
NIF3L1-206	ENST00000416651	ADHFE1	Q8IWW8	467 aa		10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	FAM9B	Q8IZU0	186 aa		10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	DHX38	Q92620	1227 aa	Known RBP	10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	COPS5	Q92905	334 aa		10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	ZNF512B	Q96KM6	892 aa	Predicted RBP	10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	TGS1	Q96RS0	853 aa	Known RBP	10.42	□□□□□ -0.74
NIF3L1-206	ENST00000416651	ZNF532	Q9HCE3	1301 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	RIF1	Q5UIP0	2472 aa	Known RBP	10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	TCRBV5S4A2T	A0A5A2	114 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	TMEM221	A6NGB7	291 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651		M0R296	226 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	GJB5	O95377	273 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	AR	P10275	920 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CHMP4BP1	P59074	171 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	HERC4	Q5GLZ8	1057 aa	Predicted RBP	10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	RASGRP2	Q7LDG7	609 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	PBXIP1	Q96AQ6	731 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	USB1	Q9BQ65	265 aa	Known RBP	10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	OSBPL7	Q9BZF2	842 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	C1orf115	Q9H7X2	142 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	SLC38A10	Q9HBR0	1119 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	GPCPD1	Q9NPB8	672 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	GPR108	Q9NPR9	543 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	A1CF	Q9NQ94	594 aa	Known RBP	10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	SCN10A	Q9Y5Y9	1956 aa		10.41	□□□□□ -0.74
NIF3L1-206	ENST00000416651	USP17L12	C9JPN9	530 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	USP17L21	D6R901	530 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651		F5H6K3	240 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651		H0Y858	1186 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	LINC01565	O15544	149 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CSPG5	O95196	566 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	PDGFB	P01127	241 aa	Predicted RBP	10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	CLCN1	P35523	988 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	COPB2	P35606	906 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	KCNJ6	P48051	423 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	KLRC3	Q07444	240 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	SLFN5	Q08AF3	891 aa		10.4	□□□□□ -0.74
NIF3L1-206	ENST00000416651	ALDH1L2	Q3SY69	923 aa		10.4	□□□□□ -0.74

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