RNA–Protein interactions for RNA: YFR002W

NIC96, Transcript of Linker nucleoporin component of the nuclear pore complex (NPC), yeastyeast

Gene NIC96, Length 2,520 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
NIC96YFR002W VTC2P43585 828 aa2.38□□□□□ -2.03
NIC96YFR002W YFR016CP43597 1233 aaKnown RBP2.38□□□□□ -2.03
NIC96YFR002W RSC1P53236 928 aa2.38□□□□□ -2.03
NIC96YFR002W CBK1P53894 756 aa2.38□□□□□ -2.03
NIC96YFR002W MSC1Q03104 513 aa2.38□□□□□ -2.03
NIC96YFR002W RAD30Q04049 632 aa2.38□□□□□ -2.03
NIC96YFR002W DPB4Q04603 196 aaKnown RBP2.38□□□□□ -2.03
NIC96YFR002W ERP1Q05359 219 aaKnown RBP2.38□□□□□ -2.03
NIC96YFR002W ETT1Q08421 412 aaKnown RBP2.38□□□□□ -2.03
NIC96YFR002W OPI1P21957 404 aa2.37□□□□□ -2.03
NIC96YFR002W PUP3P25451 205 aaKnown RBP2.37□□□□□ -2.03
NIC96YFR002W NDC1P32500 655 aa2.37□□□□□ -2.03
NIC96YFR002W YKL100CP34248 587 aa2.37□□□□□ -2.03
NIC96YFR002W YJL213WP40896 331 aa2.37□□□□□ -2.03
NIC96YFR002W ARC1P46672 376 aaKnown RBP2.37□□□□□ -2.03
NIC96YFR002W EFM6P53970 246 aa2.37□□□□□ -2.03
NIC96YFR002W TIM10P87108 93 aa2.37□□□□□ -2.03
NIC96YFR002W SET6Q12529 373 aa2.37□□□□□ -2.03
NIC96YFR002W KRE5P22023 1365 aa2.37□□□□□ -2.03
NIC96YFR002W AMD1P15274 810 aaKnown RBP2.37□□□□□ -2.03
NIC96YFR002W MCK1P21965 375 aaKnown RBP2.37□□□□□ -2.03
NIC96YFR002W NUP133P36161 1157 aa2.37□□□□□ -2.03
NIC96YFR002W VPS52P39904 641 aa2.37□□□□□ -2.03
NIC96YFR002W YEL068CP39977 110 aa2.37□□□□□ -2.03
NIC96YFR002W YSA1Q01976 231 aa2.37□□□□□ -2.03
NIC96YFR002W TAF11Q04226 346 aa2.37□□□□□ -2.03
NIC96YFR002W CYB2P00175 591 aa2.36□□□□□ -2.03
NIC96YFR002W FUM1P08417 488 aaKnown RBP2.36□□□□□ -2.03
NIC96YFR002W KAR3P17119 729 aa2.36□□□□□ -2.03
NIC96YFR002W SPC110P32380 944 aa2.36□□□□□ -2.03
NIC96YFR002W YBL055CP34220 418 aaPredicted RBP2.36□□□□□ -2.03
NIC96YFR002W MAL33P38157 468 aa2.36□□□□□ -2.03
NIC96YFR002W APT1P49435 187 aaKnown RBP2.36□□□□□ -2.03
NIC96YFR002W YGL082WP53155 381 aa2.36□□□□□ -2.03
NIC96YFR002W DRN1P53255 507 aaKnown RBP2.36□□□□□ -2.03
NIC96YFR002W BUD32P53323 261 aa2.36□□□□□ -2.03
NIC96YFR002W YKU80Q04437 629 aa2.36□□□□□ -2.03
NIC96YFR002W TCO89Q08921 799 aa2.36□□□□□ -2.03
NIC96YFR002W YLL056CQ12177 298 aa2.36□□□□□ -2.03
NIC96YFR002W NCE102Q12207 173 aaRIP-Chip data2.36□□□□□ -2.03not detected
NIC96YFR002W MRP7P12687 371 aa2.36□□□□□ -2.03
NIC96YFR002W MTF1P14908 341 aaKnown RBP2.36□□□□□ -2.03
NIC96YFR002W PTR2P32901 601 aa2.36□□□□□ -2.03
NIC96YFR002W MTC4P38335 694 aaKnown RBP2.36□□□□□ -2.03
NIC96YFR002W CSM2P40465 213 aa2.36□□□□□ -2.03
NIC96YFR002W IRC6P43615 237 aa2.36□□□□□ -2.03
NIC96YFR002W AYT1Q12226 474 aa2.36□□□□□ -2.03
NIC96YFR002W YLR278CQ05854 1341 aa2.36□□□□□ -2.03
NIC96YFR002W SEM1O94742 89 aa2.35□□□□□ -2.03
NIC96YFR002W ARD1P07347 238 aaPredicted RBP2.35□□□□□ -2.03
NIC96YFR002W CDC16P09798 840 aa2.35□□□□□ -2.03
NIC96YFR002W CDC24P11433 854 aaPredicted RBP2.35□□□□□ -2.03
NIC96YFR002W CBS2P14905 389 aa2.35□□□□□ -2.03
NIC96YFR002W SWI3P32591 825 aa2.35□□□□□ -2.03
NIC96YFR002W PCA1P38360 1216 aa2.35□□□□□ -2.03
NIC96YFR002W RBG2P53295 368 aaKnown RBP2.35□□□□□ -2.03
NIC96YFR002W BSC5P53755 489 aa2.35□□□□□ -2.03
NIC96YFR002W RLI1Q03195 608 aaKnown RBP2.35□□□□□ -2.03
NIC96YFR002W SPC19Q03954 165 aa2.35□□□□□ -2.03
NIC96YFR002W HEM2P05373 342 aa2.35□□□□□ -2.03
NIC96YFR002W RPL19AP0CX82 189 aaKnown RBP2.35□□□□□ -2.03
NIC96YFR002W RPL19BP0CX83 189 aaPredicted RBP2.35□□□□□ -2.03
NIC96YFR002W APE1P14904 514 aa2.35□□□□□ -2.03
NIC96YFR002W NOP1P15646 327 aaKnown RBP2.35□□□□□ -2.03
NIC96YFR002W NOP4P37838 685 aaKnown RBP2.35□□□□□ -2.03
NIC96YFR002W OSH3P38713 996 aaKnown RBP2.35□□□□□ -2.03
NIC96YFR002W RMD8P43620 662 aa2.35□□□□□ -2.03
NIC96YFR002W ARE2P53629 642 aaKnown RBP2.35□□□□□ -2.03
NIC96YFR002W DUG3P53871 357 aa2.35□□□□□ -2.03
NIC96YFR002W GLO2Q05584 274 aa2.35□□□□□ -2.03
NIC96YFR002W SCM3Q12334 223 aa2.35□□□□□ -2.03
NIC96YFR002W HIF1Q12373 385 aa2.35□□□□□ -2.03
NIC96YFR002W SPE4Q12455 300 aa2.35□□□□□ -2.03
NIC96YFR002W PGA3Q12746 312 aaKnown RBP2.35□□□□□ -2.03
NIC96YFR002W YIL177CP40434 1758 aa2.34□□□□□ -2.03
NIC96YFR002W YJL225CP40889 1758 aa2.34□□□□□ -2.03
NIC96YFR002W PEP5P12868 1029 aa2.34□□□□□ -2.03
NIC96YFR002W YCR022CP25620 114 aa2.34□□□□□ -2.03
NIC96YFR002W IMG1P25626 169 aa2.34□□□□□ -2.03
NIC96YFR002W YNK1P36010 153 aaKnown RBP2.34□□□□□ -2.03
NIC96YFR002W AUR1P36107 401 aaPredicted RBP2.34□□□□□ -2.03
NIC96YFR002W TIF5P38431 405 aaKnown RBP2.34□□□□□ -2.03
NIC96YFR002W SHC1P39000 512 aa2.34□□□□□ -2.03
NIC96YFR002W YIL089WP40500 205 aa2.34□□□□□ -2.03
NIC96YFR002W SNG1P46950 547 aa2.34□□□□□ -2.03
NIC96YFR002W EAF6P47128 113 aa2.34□□□□□ -2.03
NIC96YFR002W YGR250CP53316 781 aaKnown RBP2.34□□□□□ -2.03
NIC96YFR002W SXM1Q04175 944 aaKnown RBP2.34□□□□□ -2.03
NIC96YFR002W BNA5Q05979 453 aa2.34□□□□□ -2.03
NIC96YFR002W SKM1Q12469 655 aa2.34□□□□□ -2.03
NIC96YFR002W BOS1P25385 244 aa2.34□□□□□ -2.04
NIC96YFR002W SGF29P25554 259 aa2.34□□□□□ -2.04
NIC96YFR002W VMA8P32610 256 aaKnown RBP2.34□□□□□ -2.04
NIC96YFR002W RPL32P38061 130 aaKnown RBP2.34□□□□□ -2.04
NIC96YFR002W SPG5P42933 373 aa2.34□□□□□ -2.04
NIC96YFR002W PTR3P43606 678 aa2.34□□□□□ -2.04
NIC96YFR002W FAR3P46671 204 aa2.34□□□□□ -2.04
NIC96YFR002W DSD1P53095 428 aa2.34□□□□□ -2.04
NIC96YFR002W MRPL19P53875 158 aa2.34□□□□□ -2.04
NIC96YFR002W SHR3Q02774 210 aa2.34□□□□□ -2.04
Retrieved 100 of 5,963 RNA–protein pairs in 16.9 ms