RNA–Protein interactions for RNA: YPR189W

SKI3, Transcript of Ski complex component and TPR protein, yeast

Gene SKI3, Length 4,299 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SKI3	YPR189W	YBT1	P32386	1661 aa		2.46	□□□□□ -2.02
SKI3	YPR189W	NUP188	P52593	1655 aa	Known RBP	2.46	□□□□□ -2.02
SKI3	YPR189W	TFB3	Q03290	321 aa		2.46	□□□□□ -2.02
SKI3	YPR189W	SLX8	P40072	274 aa		2.46	□□□□□ -2.02
SKI3	YPR189W	NOP7	P53261	605 aa	Known RBP	2.46	□□□□□ -2.02
SKI3	YPR189W	YJL007C	P47080	104 aa		2.45	□□□□□ -2.02
SKI3	YPR189W	PDR10	P51533	1564 aa		2.45	□□□□□ -2.02
SKI3	YPR189W	GEF1	P37020	779 aa		2.45	□□□□□ -2.02
SKI3	YPR189W	NUP159	P40477	1460 aa		2.45	□□□□□ -2.02
SKI3	YPR189W	STU1	P38198	1513 aa		2.45	□□□□□ -2.02
SKI3	YPR189W	VMR1	P38735	1592 aa		2.45	□□□□□ -2.02
SKI3	YPR189W	BUD3	P25558	1636 aa		2.45	□□□□□ -2.02
SKI3	YPR189W	SCY1	P53009	804 aa		2.44	□□□□□ -2.02
SKI3	YPR189W	POL1	P13382	1468 aa		2.44	□□□□□ -2.02
SKI3	YPR189W	SSA2	P10592	639 aa	Known RBP	2.43	□□□□□ -2.02
SKI3	YPR189W	SLD2	P34252	453 aa		2.43	□□□□□ -2.02
SKI3	YPR189W	KIC1	P38692	1080 aa		2.43	□□□□□ -2.02
SKI3	YPR189W	HPC2	Q01448	625 aa		2.43	□□□□□ -2.02
SKI3	YPR189W	RPL34A	P87262	121 aa	Predicted RBP	2.43	□□□□□ -2.02
SKI3	YPR189W	SSA4	P22202	642 aa	Known RBP	2.43	□□□□□ -2.02
SKI3	YPR189W	BDF1	P35817	686 aa		2.43	□□□□□ -2.02
SKI3	YPR189W	NUP42	P49686	430 aa	Known RBP	2.42	□□□□□ -2.02
SKI3	YPR189W	MLP2	P40457	1679 aa		2.42	□□□□□ -2.02
SKI3	YPR189W	TOP2	P06786	1428 aa	Known RBP	2.42	□□□□□ -2.02
SKI3	YPR189W	CSN12	P47130	423 aa		2.42	□□□□□ -2.02
SKI3	YPR189W	PKC1	P24583	1151 aa		2.42	□□□□□ -2.02
SKI3	YPR189W	SUB2	Q07478	446 aa	Known RBP	2.42	□□□□□ -2.02
SKI3	YPR189W	BIM1	P40013	344 aa		2.42	□□□□□ -2.02
SKI3	YPR189W	YPR204W	Q08995	1032 aa		2.42	□□□□□ -2.02
SKI3	YPR189W	HAA1	Q12753	694 aa	Known RBP	2.42	□□□□□ -2.02
SKI3	YPR189W	YBL036C	P38197	257 aa		2.41	□□□□□ -2.02
SKI3	YPR189W	VHR2	P40041	505 aa		2.41	□□□□□ -2.02
SKI3	YPR189W	POM152	P39685	1337 aa		2.41	□□□□□ -2.02
SKI3	YPR189W	EDS1	P38073	919 aa		2.4	□□□□□ -2.03
SKI3	YPR189W	DBP1	P24784	617 aa	Known RBP	2.4	□□□□□ -2.03
SKI3	YPR189W	MET10	P39692	1035 aa		2.4	□□□□□ -2.03
SKI3	YPR189W	COX6	P00427	148 aa		2.39	□□□□□ -2.03
SKI3	YPR189W	VPS29	P38759	282 aa		2.39	□□□□□ -2.03
SKI3	YPR189W	ATG32	P40458	529 aa		2.39	□□□□□ -2.03
SKI3	YPR189W	ORC1	P54784	914 aa	Predicted RBP	2.39	□□□□□ -2.03
SKI3	YPR189W	NOP8	Q08287	484 aa	Predicted RBP	2.39	□□□□□ -2.03
SKI3	YPR189W	EDE1	P34216	1381 aa		2.39	□□□□□ -2.03
SKI3	YPR189W	CPS1	P27614	576 aa		2.39	□□□□□ -2.03
SKI3	YPR189W	YMR1	P47147	688 aa	Known RBP RIP-Chip data	2.39	□□□□□ -2.03	not detected
SKI3	YPR189W	SNU71	P53207	620 aa	Known RBP	2.39	□□□□□ -2.03
SKI3	YPR189W	YMR196W	Q04336	1088 aa		2.39	□□□□□ -2.03
SKI3	YPR189W	NOP53	Q12080	455 aa	Known RBP	2.39	□□□□□ -2.03
SKI3	YPR189W	SPP41	P38904	1435 aa		2.39	□□□□□ -2.03
SKI3	YPR189W	NAP1	P25293	417 aa	Known RBP	2.39	□□□□□ -2.03
SKI3	YPR189W	CDC3	P32457	520 aa	Known RBP	2.39	□□□□□ -2.03
SKI3	YPR189W	MYO4	P32492	1471 aa		2.39	□□□□□ -2.03
SKI3	YPR189W	UBP14	P38237	781 aa	Known RBP	2.39	□□□□□ -2.03
SKI3	YPR189W	ATH1	P48016	1211 aa		2.38	□□□□□ -2.03
SKI3	YPR189W	IOC4	Q04213	475 aa		2.38	□□□□□ -2.03
SKI3	YPR189W	ERG12	P07277	443 aa		2.38	□□□□□ -2.03
SKI3	YPR189W	PTC3	P34221	468 aa	Known RBP	2.38	□□□□□ -2.03
SKI3	YPR189W	PIB1	Q06651	286 aa		2.38	□□□□□ -2.03
SKI3	YPR189W	RAD54	P32863	898 aa		2.38	□□□□□ -2.03
SKI3	YPR189W	STS1	P38637	319 aa		2.37	□□□□□ -2.03
SKI3	YPR189W	YOR238W	Q08634	303 aa		2.37	□□□□□ -2.03
SKI3	YPR189W	SLX5	P32828	619 aa	Known RBP	2.37	□□□□□ -2.03
SKI3	YPR189W	TYW1	Q08960	810 aa	Known RBP	2.37	□□□□□ -2.03
SKI3	YPR189W	RTG2	P32608	588 aa	Known RBP	2.37	□□□□□ -2.03
SKI3	YPR189W	TEA1	P47988	759 aa		2.37	□□□□□ -2.03
SKI3	YPR189W	TIF1	P10081	395 aa	Known RBP	2.36	□□□□□ -2.03
SKI3	YPR189W	HAT1	Q12341	374 aa		2.36	□□□□□ -2.03
SKI3	YPR189W	MRX12	P47084	519 aa		2.36	□□□□□ -2.03
SKI3	YPR189W	YNL108C	P53929	270 aa		2.35	□□□□□ -2.03
SKI3	YPR189W	GRE2	Q12068	342 aa	Known RBP	2.35	□□□□□ -2.03
SKI3	YPR189W	PKH3	Q03306	898 aa	Predicted RBP	2.35	□□□□□ -2.03
SKI3	YPR189W	TTI1	P36097	1038 aa		2.35	□□□□□ -2.03
SKI3	YPR189W	MAP2	P38174	421 aa	Known RBP	2.35	□□□□□ -2.03
SKI3	YPR189W	PSE1	P32337	1089 aa	Known RBP	2.34	□□□□□ -2.03
SKI3	YPR189W	ARG8	P18544	423 aa		2.34	□□□□□ -2.04
SKI3	YPR189W	BIO2	P32451	375 aa		2.34	□□□□□ -2.04
SKI3	YPR189W	RRN6	P32786	894 aa		2.34	□□□□□ -2.04
SKI3	YPR189W	KTR7	P40504	517 aa		2.34	□□□□□ -2.04
SKI3	YPR189W	YOR1	P53049	1477 aa		2.33	□□□□□ -2.04
SKI3	YPR189W	SSF1	P38789	453 aa	Predicted RBP	2.33	□□□□□ -2.04
SKI3	YPR189W	YLR326W	Q06170	240 aa	Known RBP	2.33	□□□□□ -2.04
SKI3	YPR189W	HEM3	P28789	327 aa		2.33	□□□□□ -2.04
SKI3	YPR189W	CLB5	P30283	435 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	MMP1	Q12372	583 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	RPP1B	P10622	106 aa	Known RBP	2.32	□□□□□ -2.04
SKI3	YPR189W	ESS1	P22696	170 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	KTR1	P27810	393 aa	Known RBP	2.32	□□□□□ -2.04
SKI3	YPR189W	GUT1	P32190	709 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	YML083C	Q04526	418 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	RAD59	Q12223	238 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	THI12	P42883	340 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	THI5	P43534	340 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	THI11	P47183	340 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	YDR090C	Q03193	310 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	THI13	Q07748	340 aa		2.32	□□□□□ -2.04
SKI3	YPR189W	UBP10	P53874	792 aa	Predicted RBP	2.31	□□□□□ -2.04
SKI3	YPR189W	KEX1	P09620	729 aa		2.31	□□□□□ -2.04
SKI3	YPR189W	ASF1	P32447	279 aa		2.31	□□□□□ -2.04
SKI3	YPR189W	GTT3	P39996	337 aa		2.31	□□□□□ -2.04
SKI3	YPR189W	NOB1	Q08444	459 aa	Known RBP	2.31	□□□□□ -2.04
SKI3	YPR189W	VMA1	P17255	1071 aa	Known RBP	2.31	□□□□□ -2.04

Retrieved 100 of 5,963 RNA–protein pairs in 79.2 ms