RNA–Protein interactions for RNA: YDR407C

TRS120, Transcript of Component of transport protein particle (TRAPP) complex II, yeast

Gene TRS120, Length 3,870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TRS120	YDR407C	YEF3	P16521	1044 aa	Known RBP	4.9	□□□□□ -1.63
TRS120	YDR407C	FKH1	P40466	484 aa		4.89	□□□□□ -1.63
TRS120	YDR407C	ADE6	P38972	1358 aa	Known RBP	4.89	□□□□□ -1.63
TRS120	YDR407C	PSD2	P53037	1138 aa	Known RBP	4.88	□□□□□ -1.63
TRS120	YDR407C	RAD9	P14737	1309 aa		4.86	□□□□□ -1.63
TRS120	YDR407C	ESL2	P36168	1195 aa		4.85	□□□□□ -1.63
TRS120	YDR407C	CKB1	P43639	278 aa		4.85	□□□□□ -1.63
TRS120	YDR407C	ABP1	P15891	592 aa	Known RBP	4.84	□□□□□ -1.63
TRS120	YDR407C	OPY1	P38271	328 aa		4.84	□□□□□ -1.64
TRS120	YDR407C	IPL1	P38991	367 aa		4.84	□□□□□ -1.64
TRS120	YDR407C	RRP46	P53256	223 aa	Predicted RBP	4.83	□□□□□ -1.64
TRS120	YDR407C	KRE5	P22023	1365 aa		4.83	□□□□□ -1.64
TRS120	YDR407C	PRP43	P53131	767 aa	Known RBP	4.82	□□□□□ -1.64
TRS120	YDR407C	NOP7	P53261	605 aa	Known RBP	4.82	□□□□□ -1.64
TRS120	YDR407C	FIG2	P25653	1609 aa		4.82	□□□□□ -1.64
TRS120	YDR407C	ALD4	P46367	519 aa	Known RBP	4.81	□□□□□ -1.64
TRS120	YDR407C	YRB30	P53107	440 aa	Predicted RBP	4.81	□□□□□ -1.64
TRS120	YDR407C	PDS5	Q04264	1277 aa		4.81	□□□□□ -1.64
TRS120	YDR407C	TYS1	P36421	394 aa	Known RBP	4.8	□□□□□ -1.64
TRS120	YDR407C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	4.79	□□□□□ -1.64	not detected
TRS120	YDR407C	RQC2	Q12532	1038 aa	Known RBP	4.79	□□□□□ -1.64
TRS120	YDR407C	HKR1	P41809	1802 aa		4.79	□□□□□ -1.64
TRS120	YDR407C	HEF3	P53978	1044 aa	Known RBP	4.79	□□□□□ -1.64
TRS120	YDR407C	IME2	P32581	645 aa		4.78	□□□□□ -1.64
TRS120	YDR407C	TRK1	P12685	1235 aa		4.77	□□□□□ -1.65
TRS120	YDR407C	CDC45	Q08032	650 aa		4.77	□□□□□ -1.65
TRS120	YDR407C	TAP42	Q04372	366 aa		4.77	□□□□□ -1.65
TRS120	YDR407C	ITT1	Q04638	464 aa		4.77	□□□□□ -1.65
TRS120	YDR407C	PAF1	P38351	445 aa		4.76	□□□□□ -1.65
TRS120	YDR407C	VPS27	P40343	622 aa	Known RBP	4.76	□□□□□ -1.65
TRS120	YDR407C	LYS2	P07702	1392 aa		4.76	□□□□□ -1.65
TRS120	YDR407C	NUP145	P49687	1317 aa		4.76	□□□□□ -1.65
TRS120	YDR407C	SUI2	P20459	304 aa	Known RBP	4.75	□□□□□ -1.65
TRS120	YDR407C	RVB2	Q12464	471 aa	Known RBP	4.75	□□□□□ -1.65
TRS120	YDR407C	RPO41	P13433	1351 aa	Known RBP	4.75	□□□□□ -1.65
TRS120	YDR407C	EDE1	P34216	1381 aa		4.75	□□□□□ -1.65
TRS120	YDR407C	SPE2	P21182	396 aa		4.74	□□□□□ -1.65
TRS120	YDR407C	TAF5	P38129	798 aa		4.74	□□□□□ -1.65
TRS120	YDR407C	KIP3	P53086	805 aa	Known RBP	4.74	□□□□□ -1.65
TRS120	YDR407C	SCT1	P32784	759 aa		4.73	□□□□□ -1.65
TRS120	YDR407C	RTG3	P38165	486 aa		4.73	□□□□□ -1.65
TRS120	YDR407C	THI22	Q06490	572 aa		4.7	□□□□□ -1.66
TRS120	YDR407C	PPH3	P32345	308 aa		4.69	□□□□□ -1.66
TRS120	YDR407C	CPS1	P27614	576 aa		4.69	□□□□□ -1.66
TRS120	YDR407C	YIL092W	P40497	633 aa		4.69	□□□□□ -1.66
TRS120	YDR407C	URN1	Q06525	465 aa	Known RBP	4.67	□□□□□ -1.66
TRS120	YDR407C	PRD1	P25375	712 aa		4.67	□□□□□ -1.66
TRS120	YDR407C	SAP155	P43612	1002 aa		4.67	□□□□□ -1.66
TRS120	YDR407C	TAF8	Q03750	510 aa		4.67	□□□□□ -1.66
TRS120	YDR407C	ROM2	P51862	1356 aa	Known RBP	4.64	□□□□□ -1.67
TRS120	YDR407C	LSP1	Q12230	341 aa	Known RBP	4.63	□□□□□ -1.67
TRS120	YDR407C	CAB1	Q04430	367 aa		4.63	□□□□□ -1.67
TRS120	YDR407C	YDL144C	Q07589	356 aa		4.63	□□□□□ -1.67
TRS120	YDR407C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.62	□□□□□ -1.67	not detected
TRS120	YDR407C	YJR008W	P47085	338 aa		4.62	□□□□□ -1.67
TRS120	YDR407C	KRE33	P53914	1056 aa	Known RBP	4.62	□□□□□ -1.67
TRS120	YDR407C	HIM1	Q06674	414 aa		4.62	□□□□□ -1.67
TRS120	YDR407C	GRX4	P32642	244 aa		4.61	□□□□□ -1.67
TRS120	YDR407C	MYO1	P08964	1928 aa		4.61	□□□□□ -1.67
TRS120	YDR407C	CHZ1	P40019	153 aa	Predicted RBP	4.61	□□□□□ -1.67
TRS120	YDR407C	MTR4	P47047	1073 aa	Known RBP	4.61	□□□□□ -1.67
TRS120	YDR407C	CDC16	P09798	840 aa		4.61	□□□□□ -1.67
TRS120	YDR407C	YNR029C	P53729	429 aa	Known RBP	4.61	□□□□□ -1.67
TRS120	YDR407C	SNF7	P39929	240 aa	Known RBP	4.6	□□□□□ -1.67
TRS120	YDR407C	YFR016C	P43597	1233 aa	Known RBP	4.6	□□□□□ -1.67
TRS120	YDR407C	GSC2	P40989	1895 aa		4.6	□□□□□ -1.67
TRS120	YDR407C	FKS1	P38631	1876 aa	Known RBP	4.6	□□□□□ -1.67
TRS120	YDR407C	MPP10	P47083	593 aa	Known RBP	4.59	□□□□□ -1.67
TRS120	YDR407C	RTT109	Q07794	436 aa		4.59	□□□□□ -1.67
TRS120	YDR407C	POL32	P47110	350 aa		4.59	□□□□□ -1.67
TRS120	YDR407C	YNL050C	P53952	270 aa		4.59	□□□□□ -1.68
TRS120	YDR407C	MAK10	Q02197	733 aa		4.59	□□□□□ -1.68
TRS120	YDR407C	GCD7	P32502	381 aa	Predicted RBP	4.58	□□□□□ -1.68
TRS120	YDR407C	RPC31	P17890	251 aa		4.57	□□□□□ -1.68
TRS120	YDR407C	RRT14	P40470	206 aa		4.57	□□□□□ -1.68
TRS120	YDR407C	RPS19A	P07280	144 aa	Known RBP	4.57	□□□□□ -1.68
TRS120	YDR407C	RPS19B	P07281	144 aa	Predicted RBP	4.57	□□□□□ -1.68
TRS120	YDR407C	ILV3	P39522	585 aa	Known RBP	4.57	□□□□□ -1.68
TRS120	YDR407C	HAP5	Q02516	242 aa		4.57	□□□□□ -1.68
TRS120	YDR407C	YDR306C	Q06640	478 aa		4.57	□□□□□ -1.68
TRS120	YDR407C	PCT1	P13259	424 aa		4.57	□□□□□ -1.68
TRS120	YDR407C	DSD1	P53095	428 aa		4.56	□□□□□ -1.68
TRS120	YDR407C	LEU2	P04173	364 aa	Predicted RBP	4.56	□□□□□ -1.68
TRS120	YDR407C	PDI1	P17967	522 aa	Known RBP	4.55	□□□□□ -1.68
TRS120	YDR407C	RCM1	P53972	490 aa		4.55	□□□□□ -1.68
TRS120	YDR407C	ROX1	P25042	368 aa		4.55	□□□□□ -1.68
TRS120	YDR407C	RAD50	P12753	1312 aa		4.55	□□□□□ -1.68
TRS120	YDR407C	NTH2	P35172	780 aa		4.55	□□□□□ -1.68
TRS120	YDR407C	HYR1	P40581	163 aa	Known RBP	4.54	□□□□□ -1.68
TRS120	YDR407C	HGH1	P48362	394 aa	Known RBP	4.54	□□□□□ -1.68
TRS120	YDR407C	CTF4	Q01454	927 aa		4.54	□□□□□ -1.68
TRS120	YDR407C	SET1	P38827	1080 aa	Known RBP	4.53	□□□□□ -1.68
TRS120	YDR407C	PIL1	P53252	339 aa	Known RBP	4.53	□□□□□ -1.68
TRS120	YDR407C	ECM23	Q02710	187 aa		4.53	□□□□□ -1.68
TRS120	YDR407C	PMD1	P32634	1753 aa		4.53	□□□□□ -1.68
TRS120	YDR407C	NOT3	P06102	836 aa	Known RBP	4.53	□□□□□ -1.68
TRS120	YDR407C	CLC1	P17891	233 aa		4.53	□□□□□ -1.68
TRS120	YDR407C	YPP1	P46951	817 aa		4.53	□□□□□ -1.68
TRS120	YDR407C	KNS1	P32350	737 aa	Predicted RBP	4.52	□□□□□ -1.69
TRS120	YDR407C	MAM1	P40065	302 aa		4.52	□□□□□ -1.69

Retrieved 100 of 5,963 RNA–protein pairs in 29.2 ms