RNA–Protein interactions for RNA: ENST00000641746.1

CASC19-256, Transcript of cancer susceptibility 19, human

Gene CASC19, Length 958 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC19-256	ENST00000641746	VARS2	Q5ST30	1063 aa	Known RBP	12.82	□□□□□ -0.36
CASC19-256	ENST00000641746	GPR153	Q6NV75	609 aa		12.81	□□□□□ -0.36
CASC19-256	ENST00000641746	PHF8	Q9UPP1	1060 aa		12.81	□□□□□ -0.36
CASC19-256	ENST00000641746	VGF	O15240	615 aa	Predicted RBP	12.8	□□□□□ -0.36
CASC19-256	ENST00000641746	ZNF687	Q8N1G0	1237 aa		12.78	□□□□□ -0.36
CASC19-256	ENST00000641746	RNF166	Q96A37	237 aa	Predicted RBP	12.72	□□□□□ -0.37
CASC19-256	ENST00000641746	ARSI	Q5FYB1	569 aa		12.7	□□□□□ -0.38
CASC19-256	ENST00000641746	NLRP6	P59044	892 aa		12.69	□□□□□ -0.38
CASC19-256	ENST00000641746	FBXO22	Q8NEZ5	403 aa		12.69	□□□□□ -0.38
CASC19-256	ENST00000641746	DNAJC5	Q9H3Z4	198 aa		12.69	□□□□□ -0.38
CASC19-256	ENST00000641746	MYT1L	Q9UL68	1186 aa		12.69	□□□□□ -0.38
CASC19-256	ENST00000641746	BCL11B	Q9C0K0	894 aa	Predicted RBP	12.65	□□□□□ -0.38
CASC19-256	ENST00000641746	KHSRP	Q92945	711 aa	Known RBP eCLIP	12.64	□□□□□ -0.39	7e-7	■□□□□ 9.8
CASC19-256	ENST00000641746	ZNF316	A6NFI3	1004 aa	Predicted RBP	12.63	□□□□□ -0.39
CASC19-256	ENST00000641746	MFRP	Q9BY79	579 aa		12.61	□□□□□ -0.39
CASC19-256	ENST00000641746	TAOK2	Q9UL54	1235 aa		12.61	□□□□□ -0.39
CASC19-256	ENST00000641746	PTGER2	P43116	358 aa		12.6	□□□□□ -0.39
CASC19-256	ENST00000641746	STK24	Q9Y6E0	443 aa		12.6	□□□□□ -0.39
CASC19-256	ENST00000641746	KIF3C	O14782	793 aa		12.59	□□□□□ -0.39
CASC19-256	ENST00000641746	ANKRD13D	Q6ZTN6	518 aa		12.58	□□□□□ -0.4
CASC19-256	ENST00000641746	C2orf72	A6NCS6	295 aa		12.55	□□□□□ -0.4
CASC19-256	ENST00000641746	LSM11	P83369	360 aa	Known RBP eCLIP	12.53	□□□□□ -0.4
CASC19-256	ENST00000641746	STK25	O00506	426 aa		12.51	□□□□□ -0.41
CASC19-256	ENST00000641746	NUDT7	P0C024	238 aa		12.5	□□□□□ -0.41
CASC19-256	ENST00000641746	SLC34A2	O95436	690 aa		12.49	□□□□□ -0.41
CASC19-256	ENST00000641746	POTEE	Q6S8J3	1075 aa		12.47	□□□□□ -0.41
CASC19-256	ENST00000641746	PBX2	P40425	430 aa		12.46	□□□□□ -0.41
CASC19-256	ENST00000641746	LHX6	Q9UPM6	363 aa		12.46	□□□□□ -0.41
CASC19-256	ENST00000641746	PCDHGA4	Q9Y5G9	962 aa		12.46	□□□□□ -0.41
CASC19-256	ENST00000641746	ECM2	O94769	699 aa	Predicted RBP	12.45	□□□□□ -0.42
CASC19-256	ENST00000641746	AXIN2	Q9Y2T1	843 aa		12.42	□□□□□ -0.42
CASC19-256	ENST00000641746	TMC2	Q8TDI7	906 aa		12.41	□□□□□ -0.42
CASC19-256	ENST00000641746	RGL2	O15211	777 aa		12.39	□□□□□ -0.43
CASC19-256	ENST00000641746	PKD2	Q13563	968 aa		12.39	□□□□□ -0.43
CASC19-256	ENST00000641746	PPP1R37	O75864	691 aa		12.38	□□□□□ -0.43
CASC19-256	ENST00000641746	KDM4F	A0A1W2PPD8	638 aa		12.35	□□□□□ -0.43
CASC19-256	ENST00000641746	ARHGAP33	O14559	1287 aa		12.32	□□□□□ -0.44
CASC19-256	ENST00000641746	PSD	A5PKW4	1024 aa	Predicted RBP	12.3	□□□□□ -0.44
CASC19-256	ENST00000641746	ADGRD1	Q6QNK2	874 aa		12.3	□□□□□ -0.44
CASC19-256	ENST00000641746	PTCD2	Q8WV60	388 aa	Known RBP	12.3	□□□□□ -0.44
CASC19-256	ENST00000641746	HCST	Q9UBK5	93 aa		12.29	□□□□□ -0.44
CASC19-256	ENST00000641746	PLA2G2E	Q9NZK7	142 aa		12.26	□□□□□ -0.45
CASC19-256	ENST00000641746	FOXK1	P85037	733 aa		12.25	□□□□□ -0.45
CASC19-256	ENST00000641746	TK2	O00142	265 aa		12.24	□□□□□ -0.45
CASC19-256	ENST00000641746	HR	O43593	1189 aa		12.23	□□□□□ -0.45
CASC19-256	ENST00000641746	DMRTA1	Q5VZB9	504 aa		12.23	□□□□□ -0.45
CASC19-256	ENST00000641746	PLPP6	Q8IY26	295 aa		12.23	□□□□□ -0.45
CASC19-256	ENST00000641746	GPHN	Q9NQX3	736 aa	Predicted RBP	12.22	□□□□□ -0.45
CASC19-256	ENST00000641746	PSEN2	P49810	448 aa		12.21	□□□□□ -0.45
CASC19-256	ENST00000641746	DSG2	Q14126	1118 aa		12.17	□□□□□ -0.46
CASC19-256	ENST00000641746	TBC1D12	O60347	775 aa		12.16	□□□□□ -0.46
CASC19-256	ENST00000641746	PPP4R3B	Q5MIZ7	849 aa		12.16	□□□□□ -0.46
CASC19-256	ENST00000641746	HS6ST3	Q8IZP7	471 aa		12.13	□□□□□ -0.47
CASC19-256	ENST00000641746	KCTD12	Q96CX2	325 aa	Known RBP	12.1	□□□□□ -0.47
CASC19-256	ENST00000641746	OXER1	Q8TDS5	423 aa		12.08	□□□□□ -0.48
CASC19-256	ENST00000641746	STAC3	Q96MF2	364 aa		12.08	□□□□□ -0.48
CASC19-256	ENST00000641746	KCNK17	Q96T54	332 aa		12.07	□□□□□ -0.48
CASC19-256	ENST00000641746	VPS9D1	Q9Y2B5	631 aa		12.06	□□□□□ -0.48
CASC19-256	ENST00000641746	KCNH8	Q96L42	1107 aa		12.04	□□□□□ -0.48
CASC19-256	ENST00000641746	SLC4A5	Q9BY07	1137 aa		12.02	□□□□□ -0.49
CASC19-256	ENST00000641746	CCDC180	Q9P1Z9	1646 aa		12.01	□□□□□ -0.49
CASC19-256	ENST00000641746	CHGA	P10645	457 aa	Known RBP	12.01	□□□□□ -0.49
CASC19-256	ENST00000641746	NKX1-1	Q15270	411 aa	Predicted RBP	12.01	□□□□□ -0.49
CASC19-256	ENST00000641746	ZNF454	Q8N9F8	522 aa		12	□□□□□ -0.49
CASC19-256	ENST00000641746	UPF1	Q92900	1129 aa	Known RBP eCLIP	12	□□□□□ -0.49
CASC19-256	ENST00000641746	CRISPLD2	Q9H0B8	497 aa		12	□□□□□ -0.49
CASC19-256	ENST00000641746	BCL2L12	Q9HB09	334 aa		12	□□□□□ -0.49
CASC19-256	ENST00000641746	PTPN5	P54829	565 aa		11.98	□□□□□ -0.49
CASC19-256	ENST00000641746	BHMG1	C9JSJ3	638 aa	Predicted RBP	11.97	□□□□□ -0.49
CASC19-256	ENST00000641746	FOSB	P53539	338 aa		11.96	□□□□□ -0.49
CASC19-256	ENST00000641746	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.96	□□□□□ -0.49
CASC19-256	ENST00000641746	RB1CC1	Q8TDY2	1594 aa		11.96	□□□□□ -0.5
CASC19-256	ENST00000641746	PPP1R15B	Q5SWA1	713 aa		11.95	□□□□□ -0.5
CASC19-256	ENST00000641746	IFFO2	Q5TF58	517 aa		11.93	□□□□□ -0.5
CASC19-256	ENST00000641746	RYDEN	Q9NUL5	291 aa	Known RBP	11.93	□□□□□ -0.5
CASC19-256	ENST00000641746	PTPRE	P23469	700 aa		11.92	□□□□□ -0.5
CASC19-256	ENST00000641746	ZBED2	Q9BTP6	218 aa		11.92	□□□□□ -0.5
CASC19-256	ENST00000641746	NCKAP5L	Q9HCH0	1330 aa		11.91	□□□□□ -0.5
CASC19-256	ENST00000641746	THSD4	Q6ZMP0	1018 aa		11.91	□□□□□ -0.5
CASC19-256	ENST00000641746	PDE4A	P27815	886 aa		11.9	□□□□□ -0.5
CASC19-256	ENST00000641746	RGS20	O76081	388 aa		11.88	□□□□□ -0.51
CASC19-256	ENST00000641746	JPH4	Q96JJ6	628 aa		11.88	□□□□□ -0.51
CASC19-256	ENST00000641746	EVI5	O60447	810 aa		11.87	□□□□□ -0.51
CASC19-256	ENST00000641746	GOLGA8CP	A6NN73	597 aa		11.86	□□□□□ -0.51
CASC19-256	ENST00000641746	MRPL50	Q8N5N7	158 aa	Known RBP	11.86	□□□□□ -0.51
CASC19-256	ENST00000641746	ZDHHC16	Q969W1	377 aa		11.86	□□□□□ -0.51
CASC19-256	ENST00000641746	ADAM33	Q9BZ11	813 aa		11.86	□□□□□ -0.51
CASC19-256	ENST00000641746	CECR2	Q9BXF3	1484 aa		11.86	□□□□□ -0.51
CASC19-256	ENST00000641746	WNT2B	Q93097	391 aa		11.85	□□□□□ -0.51
CASC19-256	ENST00000641746		A0A0G2JS52	829 aa		11.81	□□□□□ -0.52
CASC19-256	ENST00000641746	LARP6	Q9BRS8	491 aa	Known RBP	11.81	□□□□□ -0.52
CASC19-256	ENST00000641746	GTPBP6	O43824	516 aa	Predicted RBP	11.8	□□□□□ -0.52
CASC19-256	ENST00000641746	NBPF3	Q9H094	633 aa		11.8	□□□□□ -0.52
CASC19-256	ENST00000641746	MAP3K9	P80192	1104 aa		11.78	□□□□□ -0.52
CASC19-256	ENST00000641746	DDX27	Q96GQ7	796 aa	Known RBP	11.78	□□□□□ -0.52
CASC19-256	ENST00000641746	MFSD10	Q14728	455 aa		11.76	□□□□□ -0.53
CASC19-256	ENST00000641746	IRX2	Q9BZI1	471 aa	Predicted RBP	11.76	□□□□□ -0.53
CASC19-256	ENST00000641746	EMILIN3	Q9NT22	766 aa		11.75	□□□□□ -0.53
CASC19-256	ENST00000641746	PCDHGA10	Q9Y5H3	936 aa		11.75	□□□□□ -0.53
CASC19-256	ENST00000641746	RABGEF1	Q9UJ41	708 aa		11.74	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms