RNA–Protein interactions for RNA: ENST00000621181.4

CLK1-215, Transcript of CDC like kinase 1, humanhuman

TSL 1 (best) BASIC

Gene CLK1, Length 1,843 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-215ENST00000621181 HSPA2P54652 639 aa13.04□□□□□ -0.32
CLK1-215ENST00000621181 YEATS2Q9ULM3 1422 aa13.03□□□□□ -0.32
CLK1-215ENST00000621181 CDK13Q14004 1512 aaKnown RBP13.03□□□□□ -0.32
CLK1-215ENST00000621181 MLECQ14165 292 aa13.03□□□□□ -0.32
CLK1-215ENST00000621181 MAGI2Q86UL8 1455 aa13.02□□□□□ -0.33
CLK1-215ENST00000621181 ATP1B4Q9UN42 357 aaPredicted RBP13.02□□□□□ -0.33
CLK1-215ENST00000621181 SCAPERQ9BY12 1400 aa13.01□□□□□ -0.33
CLK1-215ENST00000621181 HECW1Q76N89 1606 aa13□□□□□ -0.33
CLK1-215ENST00000621181 EHMT2Q96KQ7 1210 aa13□□□□□ -0.33
CLK1-215ENST00000621181 SIGLEC1Q9BZZ2 1709 aa13□□□□□ -0.33
CLK1-215ENST00000621181 PLCH2O75038 1416 aa13□□□□□ -0.33
CLK1-215ENST00000621181 UBTFP17480 764 aaKnown RBP12.99□□□□□ -0.33
CLK1-215ENST00000621181 FER1L4A9Z1Z3 1794 aa12.99□□□□□ -0.33
CLK1-215ENST00000621181 CDK11AQ9UQ88 783 aaPredicted RBP12.97□□□□□ -0.33
CLK1-215ENST00000621181 FMN1Q68DA7 1419 aa12.97□□□□□ -0.33
CLK1-215ENST00000621181 EFCAB2Q5VUJ9 269 aa12.97□□□□□ -0.33
CLK1-215ENST00000621181 MYO5CQ9NQX4 1742 aa12.96□□□□□ -0.34
CLK1-215ENST00000621181 ATP10AO60312 1499 aa12.95□□□□□ -0.34
CLK1-215ENST00000621181 C9orf84Q5VXU9 1444 aa12.95□□□□□ -0.34
CLK1-215ENST00000621181 MYT1LQ9UL68 1186 aa12.94□□□□□ -0.34
CLK1-215ENST00000621181 CERKQ8TCT0 537 aa12.93□□□□□ -0.34
CLK1-215ENST00000621181 ZNF518AQ6AHZ1 1483 aa12.93□□□□□ -0.34
CLK1-215ENST00000621181 ARHGEF12Q9NZN5 1544 aa12.93□□□□□ -0.34
CLK1-215ENST00000621181 KIF14Q15058 1648 aa12.93□□□□□ -0.34
CLK1-215ENST00000621181 ARHGAP5Q13017 1502 aa12.92□□□□□ -0.34
CLK1-215ENST00000621181 CLIP1P30622 1438 aa12.91□□□□□ -0.34
CLK1-215ENST00000621181 ARHGAP35Q9NRY4 1499 aa12.91□□□□□ -0.34
CLK1-215ENST00000621181 CEBPAP49715 358 aaPredicted RBP12.91□□□□□ -0.34
CLK1-215ENST00000621181 AFAP1Q8N556 730 aa12.91□□□□□ -0.34
CLK1-215ENST00000621181 TROQ12816 1431 aaPredicted RBP12.9□□□□□ -0.34
CLK1-215ENST00000621181 PREX1Q8TCU6 1659 aa12.9□□□□□ -0.34
CLK1-215ENST00000621181 KDM5CP41229 1560 aa12.88□□□□□ -0.35
CLK1-215ENST00000621181 DMRT2Q9Y5R5 561 aa12.87□□□□□ -0.35
CLK1-215ENST00000621181 UHRF1BP1Q6BDS2 1440 aa12.86□□□□□ -0.35
CLK1-215ENST00000621181 SETD1BQ9UPS6 1966 aaKnown RBP12.86□□□□□ -0.35
CLK1-215ENST00000621181 ESF1Q9H501 851 aaKnown RBP12.85□□□□□ -0.35
CLK1-215ENST00000621181 DIP2CQ9Y2E4 1556 aa12.85□□□□□ -0.35
CLK1-215ENST00000621181 LRRIQ1Q96JM4 1722 aa12.83□□□□□ -0.36
CLK1-215ENST00000621181 CDC42BPBQ9Y5S2 1711 aa12.83□□□□□ -0.36
CLK1-215ENST00000621181 STRCQ7RTU9 1775 aa12.83□□□□□ -0.36
CLK1-215ENST00000621181 MLH3Q9UHC1 1453 aa12.83□□□□□ -0.36
CLK1-215ENST00000621181 ABCA6Q8N139 1617 aa12.82□□□□□ -0.36
CLK1-215ENST00000621181 REREQ9P2R6 1566 aa12.82□□□□□ -0.36
CLK1-215ENST00000621181 PREX2Q70Z35 1606 aa12.81□□□□□ -0.36
CLK1-215ENST00000621181 ABCC1P33527 1531 aa12.81□□□□□ -0.36
CLK1-215ENST00000621181 CCDC18Q5T9S5 1454 aa12.81□□□□□ -0.36
CLK1-215ENST00000621181 TRAPPC8Q9Y2L5 1435 aa12.81□□□□□ -0.36
CLK1-215ENST00000621181 C3P01024 1663 aa12.8□□□□□ -0.36
CLK1-215ENST00000621181 AGLP35573 1532 aa12.79□□□□□ -0.36
CLK1-215ENST00000621181 CASKIN1Q8WXD9 1431 aa12.78□□□□□ -0.36
CLK1-215ENST00000621181 ITSN2Q9NZM3 1697 aa12.78□□□□□ -0.36
CLK1-215ENST00000621181 DISP3Q9P2K9 1392 aa12.78□□□□□ -0.36
CLK1-215ENST00000621181 ZNF777Q9ULD5 760 aaPredicted RBP12.77□□□□□ -0.37
CLK1-215ENST00000621181 KIDINS220Q9ULH0 1771 aa12.77□□□□□ -0.37
CLK1-215ENST00000621181 PTPRTO14522 1441 aa12.76□□□□□ -0.37
CLK1-215ENST00000621181 CNTLNQ9NXG0 1405 aa12.76□□□□□ -0.37
CLK1-215ENST00000621181 CDC42BPAQ5VT25 1732 aa12.75□□□□□ -0.37
CLK1-215ENST00000621181 FYCO1Q9BQS8 1478 aa12.74□□□□□ -0.37
CLK1-215ENST00000621181 SPAG9O60271 1321 aaKnown RBP12.73□□□□□ -0.37
CLK1-215ENST00000621181 SYCP2Q9BX26 1530 aa12.73□□□□□ -0.37
CLK1-215ENST00000621181 NCOA1Q15788 1441 aa12.73□□□□□ -0.37
CLK1-215ENST00000621181 SAMD9LQ8IVG5 1584 aa12.73□□□□□ -0.37
CLK1-215ENST00000621181 ZMYM3Q14202 1370 aa12.71□□□□□ -0.37
CLK1-215ENST00000621181 HNRNPMP52272 730 aaKnown RBP eCLIP12.71□□□□□ -0.381e-7■■■■□ 21.9
CLK1-215ENST00000621181 NPATQ14207 1427 aa12.71□□□□□ -0.38
CLK1-215ENST00000621181 ILDR2Q71H61 639 aa12.71□□□□□ -0.38
CLK1-215ENST00000621181 CFDP1Q9UEE9 299 aaPredicted RBP12.7□□□□□ -0.38
CLK1-215ENST00000621181 MROH2AA6NES4 1674 aa12.7□□□□□ -0.38
CLK1-215ENST00000621181 GPATCH8Q9UKJ3 1502 aaKnown RBP12.7□□□□□ -0.38
CLK1-215ENST00000621181 SUPT6HQ7KZ85 1726 aaKnown RBP12.7□□□□□ -0.38
CLK1-215ENST00000621181 CAMSAP1Q5T5Y3 1602 aa12.7□□□□□ -0.38
CLK1-215ENST00000621181 LTBP4Q8N2S1 1624 aa12.7□□□□□ -0.38
CLK1-215ENST00000621181 ATP7AQ04656 1500 aa12.69□□□□□ -0.38
CLK1-215ENST00000621181 CCNB3Q8WWL7 1395 aa12.68□□□□□ -0.38
CLK1-215ENST00000621181 IQSEC2Q5JU85 1478 aa12.68□□□□□ -0.38
CLK1-215ENST00000621181 GGT6Q6P531 493 aa12.67□□□□□ -0.38
CLK1-215ENST00000621181 KIAA1107Q9UPP5 1409 aa12.67□□□□□ -0.38
CLK1-215ENST00000621181 PLEKHH2Q8IVE3 1493 aa12.67□□□□□ -0.38
CLK1-215ENST00000621181 SPATA31D1Q6ZQQ2 1576 aa12.67□□□□□ -0.38
CLK1-215ENST00000621181 SOCS7O14512 581 aa12.67□□□□□ -0.38
CLK1-215ENST00000621181 A2MP01023 1474 aa12.66□□□□□ -0.38
CLK1-215ENST00000621181 NCKAP5LQ9HCH0 1330 aa12.66□□□□□ -0.38
CLK1-215ENST00000621181 MTUS2Q5JR59 1369 aa12.66□□□□□ -0.38
CLK1-215ENST00000621181 CLTCQ00610 1675 aaKnown RBP12.66□□□□□ -0.38
CLK1-215ENST00000621181 PLXNC1O60486 1568 aa12.65□□□□□ -0.38
CLK1-215ENST00000621181 INO80Q9ULG1 1556 aaPredicted RBP12.65□□□□□ -0.38
CLK1-215ENST00000621181 ZNF335Q9H4Z2 1342 aaPredicted RBP12.65□□□□□ -0.39
CLK1-215ENST00000621181 MYO3AQ8NEV4 1616 aa12.64□□□□□ -0.39
CLK1-215ENST00000621181 PKD2Q13563 968 aa12.64□□□□□ -0.39
CLK1-215ENST00000621181 ZNF142P52746 1687 aaPredicted RBP12.63□□□□□ -0.39
CLK1-215ENST00000621181 CEP170BQ9Y4F5 1589 aaPredicted RBP12.63□□□□□ -0.39
CLK1-215ENST00000621181 PLA2R1Q13018 1463 aa12.63□□□□□ -0.39
CLK1-215ENST00000621181 PTPRKQ15262 1439 aa12.63□□□□□ -0.39
CLK1-215ENST00000621181 UBAP1LF5GYI3 381 aa12.62□□□□□ -0.39
CLK1-215ENST00000621181 PPP4R3CPQ6ZMV5 832 aa12.61□□□□□ -0.39
CLK1-215ENST00000621181 ADGBQ8N7X0 1667 aa12.61□□□□□ -0.39
CLK1-215ENST00000621181 ZNF644Q9H582 1327 aaPredicted RBP12.61□□□□□ -0.39
CLK1-215ENST00000621181 TCOF1Q13428 1488 aaKnown RBP12.6□□□□□ -0.39
CLK1-215ENST00000621181 MAPK8IP2Q13387 824 aaPredicted RBP12.58□□□□□ -0.4
CLK1-215ENST00000621181 TIAM1Q13009 1591 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms